Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate N515DRAFT_2713 N515DRAFT_2713 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>FitnessBrowser__Dyella79:N515DRAFT_2713
Length = 1075
Score = 1474 bits (3815), Expect = 0.0
Identities = 743/1075 (69%), Positives = 879/1075 (81%), Gaps = 3/1075 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIKS+LI+GAGPIVIGQACEFDYSGAQACKAL+EEGYRVILVNSNPATIMTDPE
Sbjct: 1 MPKRTDIKSVLIIGAGPIVIGQACEFDYSGAQACKALKEEGYRVILVNSNPATIMTDPET 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADA YIEPI+W+ V +II KERPDAVLPTMGGQT LNCAL+L GVLE++GV +IGA+
Sbjct: 61 ADAVYIEPINWQTVERIIAKERPDAVLPTMGGQTGLNCALDLADNGVLEKYGVELIGASR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AI AEDR F +AMK IGLE ++ +A T E+AL + VGFP IIRPSFT+GGSGGG
Sbjct: 121 EAIRMAEDRELFRIAMKDIGLECPKAEVAKTFEQALEIQTKVGFPTIIRPSFTLGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYN+EEFEEI RGLDLSP E+L++ES++GWKE+EMEVVRDK DNCIIVCSIEN D M
Sbjct: 181 IAYNKEEFEEIAKRGLDLSPVHEILVEESVLGWKEFEMEVVRDKADNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQ +R+AS+AVLR+IGV+TGGSNVQF +N ++GR++VIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINAEDGRVVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLAVGYTLDEL NDITGG TPASFEP+IDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELKNDITGGLTPASFEPTIDYVVTKIP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPK-VSLDDPE 419
RF FEKF A+ RLTTQMKSVGEVMA+GRT ESLQKALRGLE+G TG +P V E
Sbjct: 361 RFAFEKFPSADARLTTQMKSVGEVMAMGRTFHESLQKALRGLEIGKTGLNPTGVDFSTDE 420
Query: 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEV 479
L ++REL++ DR++++ DAFRAGLS++ V+ L+ +D WFL E++V E +V
Sbjct: 421 GLAALKRELREPRPDRVFHLGDAFRAGLSLEEVYGLSRVDPWFLAAFEDIVLTENEVQAQ 480
Query: 480 GITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATD 539
GI+ L+A +R+LKR GF+DAR+A+L EA +R LR + PVYKRVD+CAAEFAT
Sbjct: 481 GISALDALRMRELKRMGFSDARIAELTDTDEAAVRHLRRTLGVRPVYKRVDSCAAEFATT 540
Query: 540 TAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMV 599
TAYMYSTYEEECEANP T+R+KIMVLGGGPNRIGQGIEFDYCCVHA+LALREDG+ETIMV
Sbjct: 541 TAYMYSTYEEECEANP-TNRDKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGFETIMV 599
Query: 600 NCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGV 659
NCNPETVSTDYDTSDRLYFEP+TLEDVLEIV +EKPKGVIVQYGGQTPLKLARALEAAG
Sbjct: 600 NCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDLEKPKGVIVQYGGQTPLKLARALEAAGA 659
Query: 660 PVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYV 719
PVIGTSPD+ID AEDRERFQ +E++ LKQP N T + A+ A+EIGYPLVVRPSYV
Sbjct: 660 PVIGTSPDSIDLAEDRERFQQMIEKIGLKQPPNRTARNADEALALAREIGYPLVVRPSYV 719
Query: 720 LGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE-MVLIGGI 778
LGGRAMEIVY +ADL RY + AV VSND+PVLLD FLD AVEVDVD I D E VL+GGI
Sbjct: 720 LGGRAMEIVYGDADLSRYIREAVQVSNDSPVLLDRFLDHAVEVDVDIIADAEGNVLVGGI 779
Query: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVY 838
MEHIE+AGVHSGDS+CSLP Y+LS+++QD +R+QV +A EL+V GLMN QFA++ + V+
Sbjct: 780 MEHIEEAGVHSGDSSCSLPPYSLSKDVQDELRRQVALMAKELKVIGLMNTQFAIQGDTVF 839
Query: 839 LIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFN 898
++EVNPRA+RTVPFVSKATGVPLAK+AAR MAG++L Q T+EVIP YYSVKE + PF
Sbjct: 840 ILEVNPRASRTVPFVSKATGVPLAKIAARAMAGRTLIAQNATREVIPSYYSVKEAIFPFL 899
Query: 899 KFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVV 958
KF VDP+LGPEMRSTGEVMGVGR+F AFA+ + G+ +SVR+ DK+R++
Sbjct: 900 KFQNVDPILGPEMRSTGEVMGVGRSFGAAFARGHDAAGIKTPPKGKVFVSVRDADKDRLL 959
Query: 959 DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS 1018
+A + +GF L AT GTA L G+ +NKV EGRPHI D IKNGE YI+NTT
Sbjct: 960 PVAKDAVSRGFSLVATEGTAAYLAGHGVACERINKVAEGRPHIVDLIKNGEIVYIVNTTE 1019
Query: 1019 GRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073
G++AI DS IRR ALQ++V Y TT+ G A +L+ +V S+QE+H ++K
Sbjct: 1020 GKQAIADSFSIRREALQHRVTYSTTVAGARALVHSLDYHGAGEVHSLQELHKELK 1074
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3128
Number of extensions: 128
Number of successful extensions: 13
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1075
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1030
Effective search space: 1058840
Effective search space used: 1058840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate N515DRAFT_2713 N515DRAFT_2713 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.7378.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7378.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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