Align asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 (characterized)
to candidate N515DRAFT_1546 N515DRAFT_1546 asparagine synthase (glutamine-hydrolysing)
Query= CharProtDB::CH_002444
(554 letters)
>FitnessBrowser__Dyella79:N515DRAFT_1546
Length = 559
Score = 674 bits (1739), Expect = 0.0
Identities = 340/560 (60%), Positives = 412/560 (73%), Gaps = 10/560 (1%)
Query: 1 MCSIFGVFDIKT--DAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNA 58
MCSIFG+FD++ D LR++ALELS+ RHRGPDWSG++ IL HERL+IVD +
Sbjct: 1 MCSIFGMFDLQPGDDLAGLRRQALELSQRQRHRGPDWSGVFVDAGVILVHERLAIVDPAS 60
Query: 59 GAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEF---- 114
G+QPL ++++T LAVNGEIYNH+ LRA G Y F TGSDCEVI ALY+E GPE
Sbjct: 61 GSQPLRSREETLALAVNGEIYNHRELRAASG--YDFTTGSDCEVINALYRELGPEEFLAR 118
Query: 115 -LDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIK 173
+ L G+FAFAL+DS YLI RD +G+ PLY G+D G+L VASEMKALV VC +
Sbjct: 119 GIKQLNGIFAFALWDSATQRYLIARDPIGVCPLYWGHDGEGRLCVASEMKALVGVCADVS 178
Query: 174 EFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVL 233
FP G S GE+ YY + W Y+ + + LR A E +V LM+DVPYGVL
Sbjct: 179 AFPPGHVYDSATGEVTRYYRKHWRSYEVTHGQQLEPSALRGAFEQAVHRQLMTDVPYGVL 238
Query: 234 LSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGT 293
LSGGLDSS+++A ++A R+ED +RSEAWWP+LHSFA+GL GSPDL AAQ A+ LGT
Sbjct: 239 LSGGLDSSLVAACAARFARERIEDDDRSEAWWPRLHSFAIGLEGSPDLAAAQVAADALGT 298
Query: 294 VHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDE 353
VHH +T EGLDA+ +VI HIETYDVTTIRASTPM+L++R+IKAMG+KMVLSGEGSDE
Sbjct: 299 VHHGFVYTFWEGLDALPEVIRHIETYDVTTIRASTPMFLLARRIKAMGVKMVLSGEGSDE 358
Query: 354 VFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVA 413
+FGGYLYFHKAP+ + HEETVRKL ALH +DC RANKAM AWGVEARVPFLD +FLDVA
Sbjct: 359 IFGGYLYFHKAPSPEAFHEETVRKLDALHSFDCLRANKAMMAWGVEARVPFLDLEFLDVA 418
Query: 414 MRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQV 473
M ++ + KM G+G++EK +LRE F+ LP S+ WRQKEQFSDGVGY WID LK A Q V
Sbjct: 419 MGLDARYKMAGHGRIEKAVLREAFQGALPDSILWRQKEQFSDGVGYGWIDGLKAHAEQVV 478
Query: 474 SDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDE 533
SD++ A RFP+N P +KEAYLYR IFE+ FP + A VPGG S+ACSS A+ WD
Sbjct: 479 SDREFAAASTRFPHNPPATKEAYLYRRIFEQHFPGEACAATVPGGKSIACSSPAALAWDP 538
Query: 534 AFKKMDDPSGRAV-GVHQSA 552
AF DPSGRAV GVHQ A
Sbjct: 539 AFAAAADPSGRAVRGVHQQA 558
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 919
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 559
Length adjustment: 36
Effective length of query: 518
Effective length of database: 523
Effective search space: 270914
Effective search space used: 270914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Align candidate N515DRAFT_1546 N515DRAFT_1546 (asparagine synthase (glutamine-hydrolysing))
to HMM TIGR01536 (asnB: asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4))
../bin/blast/fastacmd -i /tmp/list.7057.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7057.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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