Alignments for a candidate for aroA in Dyella japonica UNC79MFTsu3.2

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate N515DRAFT_1432 N515DRAFT_1432 3-phosphoshikimate 1-carboxyvinyltransferase

Query= BRENDA::Q83E11
         (438 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1432
          Length = 434

 Score =  461 bits (1185), Expect = e-134
 Identities = 227/429 (52%), Positives = 313/429 (72%), Gaps = 1/429 (0%)

Query: 1   MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMG 60
           +D+ + P++ L G + VPGDKS+SHR+++L+A+AEG++ + GFL G D  A  + LQ++G
Sbjct: 4   LDWLSQPARALHGNVRVPGDKSVSHRSMMLSALAEGRSHIRGFLEGEDTRATAAVLQKLG 63

Query: 61  ASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSL 120
             I+    E   +V+GVG+ GL+   +ALDCGN+GT +RLL+GLLAGQ F++ L GD SL
Sbjct: 64  VRIET-PSEGERIVDGVGLHGLRGTAQALDCGNAGTGMRLLAGLLAGQAFDSTLVGDESL 122

Query: 121 QRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLY 180
            +RPM+R+ +PL  MGA+ID+   +PPL+++G   L GI Y LP+ASAQVKS LLLAGLY
Sbjct: 123 SKRPMRRVTEPLAAMGARIDTQDGLPPLRVHGGQPLKGIRYTLPVASAQVKSALLLAGLY 182

Query: 181 ARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFF 240
           A+G+T + EP P+RD+TER+L  F + ++ +     +SGG +L+A D+ +P D SSAAFF
Sbjct: 183 AQGETEVIEPHPTRDYTERMLAAFGWPIEFEPGRARLSGGHRLRATDVEVPADFSSAAFF 242

Query: 241 IVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARL 300
           +VA +I PG+ +RL  VG+NP R G++  L++MGADI V +  E   EP  D+ VRHA L
Sbjct: 243 LVAGSIVPGAELRLPAVGLNPRRTGLLQALRLMGADIAVENQRESGGEPVGDLIVRHAPL 302

Query: 301 KGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIA 360
            G+++P   VP  IDEFP L IAAAVAQG+TV+R AAELRVKE+DRIA M  G++ +G  
Sbjct: 303 HGVELPEALVPDMIDEFPALFIAAAVAQGRTVVRGAAELRVKESDRIATMAAGMKAIGAR 362

Query: 361 AESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVE 420
            E  PDG II+GG L GGEV+S+ DHRIAM+FAVAG +A+ P+RI +C NV TSFP F+E
Sbjct: 363 IEETPDGAIIEGGALRGGEVDSHGDHRIAMSFAVAGLVAQEPIRIADCANVATSFPGFME 422

Query: 421 LANEVGMNV 429
           LAN  G ++
Sbjct: 423 LANGCGFDL 431


Lambda     K      H
   0.318    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 625
Number of extensions: 31
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 434
Length adjustment: 32
Effective length of query: 406
Effective length of database: 402
Effective search space:   163212
Effective search space used:   163212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate N515DRAFT_1432 N515DRAFT_1432 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.6321.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6321.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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