Alignments for a candidate for aroB in Dyella japonica UNC79MFTsu3.2

Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate N515DRAFT_1794 N515DRAFT_1794 3-dehydroquinate synthase

Query= BRENDA::P07639
         (362 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1794
          Length = 366

 Score =  323 bits (827), Expect = 6e-93
 Identities = 180/362 (49%), Positives = 233/362 (64%), Gaps = 2/362 (0%)

Query: 1   MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQA 60
           +  I V LG+RSYP+ I  GL ++ A +  +  G   ++++N T+APLYL++V   LE  
Sbjct: 7   LRSIDVALGQRSYPVWIGPGLLDDRARWRAMLRGRHALVISNTTVAPLYLERVAAGLE-- 64

Query: 61  GVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQR 120
           G+   + +L DGE +K+   +     AL Q    RD  +VALGGGVVGDL GF+AA + R
Sbjct: 65  GLQWSAFLLDDGEAHKTFDNVGRALDALAQLGATRDACVVALGGGVVGDLAGFSAACWMR 124

Query: 121 GVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELAS 180
           G+ FIQ+PTTLL+ VDSSVGGKT VN P GKN++GAF+QP +V+ D+D L TLP RE  +
Sbjct: 125 GIDFIQMPTTLLAMVDSSVGGKTGVNLPAGKNLVGAFHQPRAVIADIDTLATLPQREYRA 184

Query: 181 GLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGLR 240
           GLAEV+K   I D  FF WLE++ DAL   D   +   I R  + KA VVA DE E G R
Sbjct: 185 GLAEVVKGAAIGDLPFFAWLEQHADALAARDTAPLIEAIARKVQYKAGVVARDETEQGER 244

Query: 241 ALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLKRA 300
           ALLNLGHTFGHA+E    Y   LHGE VA GM++AAR SERLG  ++A+T R+  LL+R 
Sbjct: 245 ALLNLGHTFGHALETAGKYTTLLHGEGVAVGMLLAARLSERLGMSAAADTARLQRLLERL 304

Query: 301 GLPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIADCQ 360
           GLPV  P  M  QA L  M  DKK  AG +RLIL   IG++E+  GV    VL  + +  
Sbjct: 305 GLPVAIPPGMDPQALLALMRLDKKNTAGTLRLILWRGIGRAEIVGGVDEREVLATLHEAT 364

Query: 361 SA 362
           +A
Sbjct: 365 AA 366


Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 317
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 366
Length adjustment: 29
Effective length of query: 333
Effective length of database: 337
Effective search space:   112221
Effective search space used:   112221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_1794 N515DRAFT_1794 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.22306.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22306.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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