Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate N515DRAFT_0107 N515DRAFT_0107 chorismate synthase
Query= SwissProt::P12008 (361 letters) >FitnessBrowser__Dyella79:N515DRAFT_0107 Length = 362 Score = 477 bits (1227), Expect = e-139 Identities = 233/360 (64%), Positives = 286/360 (79%) Query: 1 MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60 M+ N+ G++F VTTFGESHG A+GC++DG PPG+ + E++ ++DLDRR G SR+T+QRR Sbjct: 1 MSSNSFGKIFTVTTFGESHGPAIGCVIDGCPPGLAIDESEFRNDLDRRATGKSRHTSQRR 60 Query: 61 EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120 E D V+ILSGV+EG TTGT I LLI NTDQRS+DY I + FRPGHADY+Y QKYG+RD Sbjct: 61 EADDVEILSGVYEGRTTGTPIALLIRNTDQRSKDYGDIVNTFRPGHADYSYWQKYGIRDP 120 Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180 RGGGRSSARET MRVAA IAKK+LAE+ G+ +RG L Q+G+I DW+ VEQNPFF Sbjct: 121 RGGGRSSARETTMRVAAAVIAKKWLAERHGVRVRGYLAQLGEIAPQGFDWAAVEQNPFFW 180 Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240 P ++ AL++ M AL+K GDS+GA+V VVA GVP G GEP++ +LD D+A ALMSINAV Sbjct: 181 PHAAQVPALEKAMDALRKSGDSVGARVNVVADGVPPGWGEPIYGKLDGDLAAALMSINAV 240 Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300 KGVEIGDGF VA RGS++RDE++ GF SNHAGGILGGIS+GQ + A +ALKPTSSI + Sbjct: 241 KGVEIGDGFAAVAQRGSEHRDEMSPAGFASNHAGGILGGISTGQAVTASIALKPTSSILI 300 Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR 360 PG ++N GE VE++TKGRHDPCVGIRA PIAEAM+A+VLMDH LR RAQ DV PR Sbjct: 301 PGHSVNLAGEPVEVVTKGRHDPCVGIRATPIAEAMMALVLMDHALRHRAQCGDVGEVSPR 360 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 439 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 361 Length of database: 362 Length adjustment: 29 Effective length of query: 332 Effective length of database: 333 Effective search space: 110556 Effective search space used: 110556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate N515DRAFT_0107 N515DRAFT_0107 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))
../bin/blast/fastacmd -i /tmp/list.23540.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23540.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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