Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate N515DRAFT_3371 N515DRAFT_3371 3-dehydroquinate dehydratase
Query= BRENDA::O30557
(147 letters)
>FitnessBrowser__Dyella79:N515DRAFT_3371
Length = 149
Score = 208 bits (530), Expect = 2e-59
Identities = 104/146 (71%), Positives = 115/146 (78%)
Query: 1 MATLLVLHGPNLNLLGTREPGTYGSTTLGQINQDLERRAREAGHHLLHLQSNAEYELIDR 60
MA +LVLHGPNLNLLG REP YG TTL IN L RAREAGH L QSNAE+ELI R
Sbjct: 1 MAKILVLHGPNLNLLGAREPEIYGHTTLADINAALAARAREAGHELAWYQSNAEHELIGR 60
Query: 61 IHAARDEGVDFIIINPAAFTHTSVALRDALLAVSIPFIEVHLSNVHKREPFRHHSYFSDV 120
IH ARDE V I+ NP AFTHTS+ALRDAL AV+IPF+EVHLSNVH REPFR HSY +D+
Sbjct: 61 IHQARDEQVATILFNPGAFTHTSIALRDALAAVAIPFVEVHLSNVHAREPFRRHSYLADI 120
Query: 121 AVGVICGLGATGYRLALESALEQLQR 146
AVGVICG G YRLALE+AL +L+R
Sbjct: 121 AVGVICGFGPDSYRLALEAALSRLER 146
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 149
Length adjustment: 16
Effective length of query: 131
Effective length of database: 133
Effective search space: 17423
Effective search space used: 17423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)
Align candidate N515DRAFT_3371 N515DRAFT_3371 (3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.24078.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24078.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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