Alignments for a candidate for aroE in Dyella japonica UNC79MFTsu3.2

Align shikimate dehydrogenase (NADP+) (EC 1.1.1.25) (characterized)
to candidate N515DRAFT_3118 N515DRAFT_3118 shikimate dehydrogenase (EC 1.1.1.25)

Query= BRENDA::Q88RQ5
         (274 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3118
          Length = 276

 Score =  206 bits (525), Expect = 3e-58
 Identities = 128/273 (46%), Positives = 150/273 (54%), Gaps = 8/273 (2%)

Query: 3   QYVVFGNPIGHSKSPLIHRLFAEQTGQDLEYATLLAPLDEFSDCARGFFKQGS-GGNVTV 61
           Q+ VFG+PI HS SP IH+ FA Q G  LEY T+ A   EF+   R FF  G  G NVT+
Sbjct: 5   QFAVFGHPIAHSLSPQIHQAFARQFGIALEYRTIDAAPAEFAASVRRFFAAGGRGANVTL 64

Query: 62  PFKEEAFRLCDSLTPRARRAGAVNTLSKLADGTLQGDNTDGAGLVRDLTVNAGVELAGKR 121
           P K  AF L D  +  A R G  N L+ L DG L   NTDGAGLVRDLT    ++L G  
Sbjct: 65  PHKAAAFELADERSEAAVRVGTANVLTPLPDGRLAAHNTDGAGLVRDLTERHRMDLRGHD 124

Query: 122 ILILGAGGAVRGVLEPILAHKPQSLVIANRTVEKAEQLAREFDELGPVVASGFAWLQ--- 178
            L+LGAGGA RGV   +L    ++L I NRT E A+ LA    E  P  A    W     
Sbjct: 125 ALLLGAGGAARGVAWSLLDAGVRTLTIVNRTPETADALADAIGE--PARAHTRYWEDLDD 182

Query: 179 -EPVDVIINATSASLAGELPPIADSLVEAGRTVCYDMMYGKEPTPFCQWATKLGAAKVLD 237
               D+IINATSA + G+   +    V   R  CYD+ YGK    F  WA    A    D
Sbjct: 183 IGSFDLIINATSAGVLGKPLDLPFGFV-GNRATCYDLSYGKAAAGFVAWARAANALYAFD 241

Query: 238 GLGMLAEQAAEAFFIWRGVRPDTAPVLAELRRQ 270
           GLGML E AA+AF +W G RPDT PV   LRRQ
Sbjct: 242 GLGMLVETAADAFELWHGKRPDTDPVHDALRRQ 274


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 245
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 276
Length adjustment: 25
Effective length of query: 249
Effective length of database: 251
Effective search space:    62499
Effective search space used:    62499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate N515DRAFT_3118 N515DRAFT_3118 (shikimate dehydrogenase (EC 1.1.1.25))
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.21484.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21484.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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