Alignments for a candidate for aroG in Dyella japonica UNC79MFTsu3.2

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate N515DRAFT_0700 N515DRAFT_0700 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase

Query= BRENDA::A0A0D5ZBC4
         (539 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0700
          Length = 466

 Score =  402 bits (1034), Expect = e-116
 Identities = 207/447 (46%), Positives = 284/447 (63%), Gaps = 6/447 (1%)

Query: 80  PGKWTVDSWKSKKALQLPEYPDQAELESVLKTLDAFPPIVFAGEARSLEEKLGEAAMGNA 139
           P  WT  SW+ + ALQ P Y +  EL      L   PP+V + E  +L++ L EA  G  
Sbjct: 20  PSAWTPASWQRRTALQQPLYENAGELAQATAHLARLPPLVTSWEVLALKQALAEAQEGQR 79

Query: 140 FLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDPF 199
           FLLQGGDCAESF +  +  I +  ++LLQM  VL+ G +MPV++VGR AGQ+AKPRS   
Sbjct: 80  FLLQGGDCAESFADCTSPVISNRLKVLLQMSLVLVHGMRMPVLRVGRFAGQYAKPRSTDM 139

Query: 200 EEKNGVKLPSYRGDNVNGDSFDEKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQR 259
           E ++GV LPS+RGD VN   F  ++R  DPQR+I+A+  SA T+N +RA   GG+A +  
Sbjct: 140 ETRDGVTLPSFRGDLVNSPEFTAEARRADPQRLIQAHAHSALTMNFVRALIDGGFADLHH 199

Query: 260 VTQWNLDFTEHSEQGDRYRELASRVDEALGFMAAAGLTVDHPI--MTTTEFWTSHECLLL 317
              W+L + EHS     YR + + + ++L FM     T+  PI   T  +F+TSHE LLL
Sbjct: 200 PEYWDLAWVEHSPLAAEYRRMVAGIGDSLRFME----TLAGPIAGFTRVDFFTSHEALLL 255

Query: 318 PYEQSLTRLDSTSGRYYDCSAHFLWAGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNE 377
            YE++LTR       +++ S HF W G RT  LDGAHVE+ RG+ NP+ +KV   + P +
Sbjct: 256 HYEEALTRQVPRHPGWFNLSTHFPWIGMRTAALDGAHVEYFRGIRNPIAVKVGPSVTPEQ 315

Query: 378 LVKLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKA 437
           L+ L+E LNP ++ GR+T+I RMG   +   LP L+ AV+RAG+ V WV+DPMHGNT   
Sbjct: 316 LLPLVEALNPDDEPGRLTLIHRMGNAQIAKALPPLLDAVKRAGRRVLWVADPMHGNTEST 375

Query: 438 PCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSR 497
             G KTR FD+IR E+   FD+H   G+  GGVHLE+TG++VTEC+GG+R ++  DL   
Sbjct: 376 SNGYKTRRFDNIRGELDQAFDIHAAAGTRLGGVHLELTGEDVTECMGGARDLSEADLDRA 435

Query: 498 YHTHCDPRLNASQSLELAFIIAERLRK 524
           Y +  DPRLN  QSLELA +I  + +K
Sbjct: 436 YKSTVDPRLNYEQSLELAMLIVHKSQK 462


Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 632
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 466
Length adjustment: 34
Effective length of query: 505
Effective length of database: 432
Effective search space:   218160
Effective search space used:   218160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate N515DRAFT_0700 N515DRAFT_0700 (3-deoxy-D-arabinoheptulosonate-7-phosphate synthase)
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.17402.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.