Alignments for a candidate for aroG in Dyella japonica UNC79MFTsu3.2

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate N515DRAFT_1068 N515DRAFT_1068 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase

Query= BRENDA::C3TIE2
         (350 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1068
          Length = 365

 Score =  424 bits (1090), Expect = e-123
 Identities = 214/344 (62%), Positives = 254/344 (73%)

Query: 6   DDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGPCSIHD 65
           DDLRI+ I  L  P  ++    A E A +TVAHAR A+H IL G DDRL+VVIGPCSIHD
Sbjct: 7   DDLRIRAITPLSTPAEVMRDCHAGELALDTVAHARAAVHDILAGQDDRLVVVIGPCSIHD 66

Query: 66  PVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRI 125
             AA EYA RLL  R    D LEIVMRVYFEKPRTTVGWKGLINDP +D SF+I+ GLR+
Sbjct: 67  TAAAMEYARRLLGQRRRFADTLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFRIDKGLRL 126

Query: 126 ARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGF 185
           AR LL DIN  G+PA  EFLDMITPQY+ADL++WGAIGARTTESQVHRELASGLSCPVGF
Sbjct: 127 ARTLLRDINQLGVPAGCEFLDMITPQYIADLVAWGAIGARTTESQVHRELASGLSCPVGF 186

Query: 186 KNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKH 245
           KNGTDG +K+A+DA+ AA  PH F++VTK G +AI +T GN DCH+ILRGGK+PNY A  
Sbjct: 187 KNGTDGNVKIAVDAVQAASQPHHFMAVTKDGRTAIASTMGNEDCHVILRGGKQPNYDAAS 246

Query: 246 VAEVKEGLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVMVESHL 305
           V    E + + GL  ++M+D SHANSSKQ + Q  V  D+  Q+  GE+ IIGVMVESHL
Sbjct: 247 VDAACEAIARGGLSPRLMVDASHANSSKQPENQPLVIDDIALQLEDGERRIIGVMVESHL 306

Query: 306 VEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKARR 349
           + G Q L   + L YG+SITD CI W  +  +L +L  AV+ RR
Sbjct: 307 LGGRQELVPEQSLRYGQSITDGCIDWNASVGVLERLDEAVRRRR 350


Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 422
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 365
Length adjustment: 29
Effective length of query: 321
Effective length of database: 336
Effective search space:   107856
Effective search space used:   107856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_1068 N515DRAFT_1068 (3-deoxy-D-arabinoheptulosonate-7-phosphate synthase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.30456.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30456.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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