Alignments for a candidate for aroG in Dyella japonica UNC79MFTsu3.2

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate N515DRAFT_3260 N515DRAFT_3260 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase

Query= BRENDA::P29976
         (525 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3260
          Length = 472

 Score =  411 bits (1057), Expect = e-119
 Identities = 203/443 (45%), Positives = 290/443 (65%), Gaps = 5/443 (1%)

Query: 75  WTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLL 134
           WTP SW+L++A Q P Y +  +LE+V + I   PP+V +GE + L+  LADA  G+ FLL
Sbjct: 14  WTPASWRLREAQQQPCYDDRAQLENVARRIGKLPPLVTSGEIQELKRALADAQEGRRFLL 73

Query: 135 QGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEK 194
            GGDCAESF + +A  I +  +VL QMS++L  G + PVI+VGR AGQ+AKPRS   E  
Sbjct: 74  HGGDCAESFGDCDADTIVNRLKVLFQMSLILGHGLKQPVIRVGRFAGQYAKPRSSDRETV 133

Query: 195 DGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQ 254
            G  LPS++GD +N   FD  +R PDP RM +AY  SA TLN  RA   GG+  ++    
Sbjct: 134 GGETLPSFRGDIVNAAAFDAAARRPDPERMFQAYAFSALTLNFTRALFEGGFGDLRHPEY 193

Query: 255 WNLDFVEQSEQADRYQELANRVDEALGFMSACG--LGTDHPLMTTTDFYTSHECLLLPYE 312
           W LD+++QS +A  Y+     +  +  F+   G  +GT+     +  FYTSHE LLLP+E
Sbjct: 194 WQLDWIDQSPRAIEYRREVEEIANSWRFLHTLGGQVGTER---VSAGFYTSHEALLLPFE 250

Query: 313 QSLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVK 372
           +++TR       +++ S H+ W G RT  +DGAH+E+ RG+ NP+ +KV     P +L++
Sbjct: 251 EAVTRRVPHRRGWFNLSTHLPWIGMRTSDIDGAHIEYFRGLQNPVAMKVGPSTRPADLLR 310

Query: 373 LVEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCG 432
           L+E+LNP+ +PGR+T+I RMG +++   LP L+ AVRR+G+ V WV DPMHGNT   P G
Sbjct: 311 LIEVLNPHEEPGRMTLITRMGCKHIAEALPPLLAAVRRAGRHVLWVVDPMHGNTETTPTG 370

Query: 433 LKTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHT 492
           +KTR FD+I +E+ A   +H  EG+  GG+HLEMTG++VTEC+GG+R++   DLS  Y T
Sbjct: 371 IKTRHFDNIRSELEAAFQIHGAEGTRLGGVHLEMTGEDVTECLGGARSLQEQDLSRAYKT 430

Query: 493 HCDPRLNASQSLELAFIVAERLR 515
             DPRLN  Q++ELA ++ +  R
Sbjct: 431 TVDPRLNYEQAMELAMLITKVAR 453


Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 594
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 472
Length adjustment: 34
Effective length of query: 491
Effective length of database: 438
Effective search space:   215058
Effective search space used:   215058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate N515DRAFT_3260 N515DRAFT_3260 (3-deoxy-D-arabinoheptulosonate-7-phosphate synthase)
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.2688.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2688.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.