Alignments for a candidate for cysK in Dyella japonica UNC79MFTsu3.2

Align O-ureido-L-serine synthase; Cysteine synthase homolog DscD; O-acetylserine sulfhydrylase; EC 2.6.99.3; EC 2.5.1.47 (characterized)
to candidate N515DRAFT_2767 N515DRAFT_2767 cysteine synthase A

Query= SwissProt::D2Z027
         (324 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2767
          Length = 313

 Score =  432 bits (1112), Expect = e-126
 Identities = 208/310 (67%), Positives = 262/310 (84%)

Query: 3   LFNSILDTIGRTPIVRLQRMAPEHTSVYVKVESFNPGGSVKDRLALSVVLDAEAKGLLKP 62
           +++SILDTIG+TP+V+L R+AP+H  +YVKVE+FNP GSVKDRLAL+++LDAEA+G +KP
Sbjct: 2   IYDSILDTIGKTPVVKLHRLAPKHVELYVKVEAFNPAGSVKDRLALAIILDAEARGTIKP 61

Query: 63  GDTIVECTSGNVGIALAMVAAARGYRFVAVMGDTYSVERRKLIRAYGGKLVLFPGHLGSK 122
           G T+VE TSGN G+ALA V AARGY FVAVM +T+S+ERRKLIRAYGGK++L P      
Sbjct: 62  GQTVVEATSGNTGVALAAVCAARGYPFVAVMTETFSIERRKLIRAYGGKVLLTPAAERGS 121

Query: 123 GGNLIADELAEKYGWFRARQFDNPANPSYHRETTASEILADFAGKRLDHFVTGFGTTGTL 182
           G    A ELA+K+GWF ARQF+NPANP+YHR TTA+EIL DFAG+RLD+FVTG+GT GTL
Sbjct: 122 GMVRKAKELADKHGWFLARQFENPANPAYHRSTTAAEILRDFAGRRLDYFVTGWGTGGTL 181

Query: 183 TGVGQMLRVARPEVRVVALEPSNAAMLARGEWSPHQIQGLAPNFVPGVLDRSVIDDLVTM 242
           TGVG++L+VARPEV+V+A EP+ A++LA  EW PH+IQG  P+FVP VL+R V   ++ +
Sbjct: 182 TGVGEVLKVARPEVKVIASEPAGASLLAGKEWQPHKIQGWTPDFVPAVLNREVAQQILPV 241

Query: 243 DEVTARDTSRRLAAEEGIFAGISAGATVATALSIAEHAPEGTVLLAMLPDTGERYLSTFL 302
           D+V ARDTSR LA +EGIF GIS+GAT+A AL +A+ APEG+VLLAMLPDTGERYLSTFL
Sbjct: 242 DDVVARDTSRALAQKEGIFVGISSGATLAAALQVAKDAPEGSVLLAMLPDTGERYLSTFL 301

Query: 303 FDGVDEGSDD 312
           F+GV+EGSD+
Sbjct: 302 FEGVNEGSDE 311


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 313
Length adjustment: 27
Effective length of query: 297
Effective length of database: 286
Effective search space:    84942
Effective search space used:    84942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_2767 N515DRAFT_2767 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.11868.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11868.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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