Align glutamine synthetase (EC 6.3.1.2) (characterized)
to candidate N515DRAFT_3024 N515DRAFT_3024 L-glutamine synthetase (EC 6.3.1.2)
Query= BRENDA::P0A1P6
(469 letters)
>FitnessBrowser__Dyella79:N515DRAFT_3024
Length = 469
Score = 644 bits (1661), Expect = 0.0
Identities = 306/469 (65%), Positives = 367/469 (78%)
Query: 1 MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
M A+ VL ++ EH+V+FVDLRF D GK HVT PAH ++ FE+GKMFDGSSI GWKG
Sbjct: 1 MPAQKVLDLIQEHDVEFVDLRFADMLGKHHHVTFPAHTIDESTFEDGKMFDGSSIAGWKG 60
Query: 61 INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATG 120
INESDM+L+PD TA +DPF + L++ CD+LEP T+Q Y RDPRSIAKR E +L++TG
Sbjct: 61 INESDMILLPDPDTAYLDPFSGHTQLVLHCDVLEPSTMQAYGRDPRSIAKRGEAFLKSTG 120
Query: 121 IADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 180
IADT FGPEPEFF+FD +R+ + I E +W+S KYE N GHRPGVKGGY
Sbjct: 121 IADTAFFGPEPEFFIFDSVRWQNDMGRVFYEIGSEEASWSSRYKYEDNNTGHRPGVKGGY 180
Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
FPV PVDS D+R++MC V+E +G VVE HHHEVA AGQ E+ +FNT+ +KADE+ K
Sbjct: 181 FPVSPVDSLGDLRADMCKVLESLGQVVEVHHHEVANAGQCEIGVKFNTLVQKADELMTMK 240
Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIG 300
YV+ NVAH+ GKTATFMPKP+ GDNGSGMH H SLAK+G NLF+GD Y GLS+ AL+YIG
Sbjct: 241 YVIKNVAHQNGKTATFMPKPIVGDNGSGMHVHQSLAKDGKNLFAGDLYGGLSQTALWYIG 300
Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVR 360
G+ KHAKAINA AN TTNSYKRLVPG+EAPVMLAYSARNRSAS RIP V++PK RRIEVR
Sbjct: 301 GIFKHAKAINAFANSTTNSYKRLVPGFEAPVMLAYSARNRSASCRIPYVSNPKGRRIEVR 360
Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
FPDP + YL F AL+MAGLDGI NKI PG DK+LYDLPPEE K IPQV SL++AL
Sbjct: 361 FPDPMNSGYLVFTALMMAGLDGIINKIDPGAPADKDLYDLPPEEEKNIPQVCSSLDQALE 420
Query: 421 ALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
ALD DR+FLKAGGVFTD+ IDAYIAL+ +E R R + HP+EF++YY++
Sbjct: 421 ALDKDRDFLKAGGVFTDDFIDAYIALKMQEVTRYRASTHPLEFQMYYAL 469
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 748
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space: 190096
Effective search space used: 190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Align candidate N515DRAFT_3024 N515DRAFT_3024 (L-glutamine synthetase (EC 6.3.1.2))
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))
../bin/blast/fastacmd -i /tmp/list.21436.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21436.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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