Alignments for a candidate for hisA in Dyella japonica UNC79MFTsu3.2

Align 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate N515DRAFT_2933 N515DRAFT_2933 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Query= ecocyc::PRIBFAICARPISOM-MONOMER
         (245 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2933
          Length = 242

 Score =  218 bits (555), Expect = 9e-62
 Identities = 117/241 (48%), Positives = 156/241 (64%), Gaps = 4/241 (1%)

Query: 2   IIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKRQ 61
           +IPA+DL  G VVRL QGDYG+Q  Y  +P    + YA  GA  LH+VDL GA+  +   
Sbjct: 5   VIPAIDLRTGRVVRLRQGDYGQQTTYEFEPRELARRYAEAGAAWLHVVDLDGARSGSLDN 64

Query: 62  IPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSQDMVKGWFERFGA 121
           + +I+ L A   + VQ GGGVRSE D+  L +AGVARVVVGS A++   +V  W  +FG 
Sbjct: 65  LQVIEAL-ARDGMQVQAGGGVRSEADLQRLFDAGVARVVVGSVAIREPALVGAWLGKFGT 123

Query: 122 DALVLALDVR-IDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLA 180
           D L +ALD R ID  G   +  +GW E    SL++L   Y   G +H+LCTDI RDG LA
Sbjct: 124 DKLTVALDTRRID--GRWALPSAGWTELEARSLDELAPWYAARGARHLLCTDIDRDGMLA 181

Query: 181 GSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTGVRGVIVGRALLEGKFTVKEAIA 240
           G N+ LY ++    P +A Q+SGG+  +DD+ A R  G +GVI+GRALLEG+FT++EA+A
Sbjct: 182 GFNLELYRDLARTAPTLAVQASGGVRSVDDIVAARAAGAQGVILGRALLEGRFTIEEALA 241

Query: 241 C 241
           C
Sbjct: 242 C 242


Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 174
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 242
Length adjustment: 24
Effective length of query: 221
Effective length of database: 218
Effective search space:    48178
Effective search space used:    48178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate N515DRAFT_2933 N515DRAFT_2933 ( 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.20749.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20749.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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