Alignments for a candidate for hisC in Dyella japonica UNC79MFTsu3.2

Align Histidinol-phosphate aminotransferase; Imidazole acetol-phosphate transaminase; HPAT; HspAT; EC 2.6.1.9 (characterized)
to candidate N515DRAFT_2936 N515DRAFT_2936 histidinol-phosphate aminotransferase

Query= SwissProt::P06986
         (356 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2936
          Length = 353

 Score =  272 bits (695), Expect = 1e-77
 Identities = 151/353 (42%), Positives = 210/353 (59%), Gaps = 2/353 (0%)

Query: 4   VTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLNRYPECQPKAV 63
           +++ DLAR  +R + PY SAR     G + LNANE   A   +   +  NRYP+ QP A+
Sbjct: 1   MSVLDLARPELRAMQPYSSARMEASGGAILLNANESAWAPAGE-AGRGCNRYPDPQPAAL 59

Query: 64  IENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVE 123
           +   A   GV+ EQ+LV RG+DE I+LL+RAFC  G+DAI   PPT+GMYSV A      
Sbjct: 60  LRALAALYGVREEQLLVGRGSDEAIDLLVRAFCRAGRDAIAIQPPTFGMYSVCARIQDAG 119

Query: 124 CRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVV 182
              VP   ++ +D   +   L   VK+V+VC+PNNPTGQ +       L     G+A++V
Sbjct: 120 IVEVPLAADFTVDADALLAALTPAVKLVFVCTPNNPTGQPVPRATIERLARELAGRALLV 179

Query: 183 ADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAP 242
            DEAY+EF    S+AG +  Y +LA+LRTLSKA+ALAG R G  LA+ EVI LL K+I P
Sbjct: 180 VDEAYVEFADGGSVAGLIDTYDNLAVLRTLSKAWALAGARIGTLLAHAEVIALLRKIIPP 239

Query: 243 YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILA 302
           YPL  P    A + LS QG     E +  + AER  +  AL  +P V +V  S+ N++  
Sbjct: 240 YPLPLPCVTAALEGLSAQGQAEAAEHIRIVRAERARMTPALAALPGVREVLPSQANFLAV 299

Query: 303 RFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALRAEQ 355
           RF  + A ++ L+  GI++RD  + P+L   LRIT+GT  E+ RV+D L  ++
Sbjct: 300 RFDDAGAAYQRLFAAGIVVRDVRRYPNLGDALRITIGTPAENARVLDVLNGDR 352


Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 342
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 353
Length adjustment: 29
Effective length of query: 327
Effective length of database: 324
Effective search space:   105948
Effective search space used:   105948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_2936 N515DRAFT_2936 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.22761.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22761.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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