Alignments for a candidate for hisD in Dyella japonica UNC79MFTsu3.2

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (characterized)
to candidate N515DRAFT_2937 N515DRAFT_2937 histidinol dehydrogenase

Query= SwissProt::P06988
         (434 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2937
          Length = 435

 Score =  475 bits (1223), Expect = e-138
 Identities = 254/432 (58%), Positives = 309/432 (71%), Gaps = 4/432 (0%)

Query: 7   IDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTAL 66
           +DWN+     Q Q L RPA S +E + R V  I+  V+A GD ALRE SAK+D+  + A+
Sbjct: 4   LDWNALDPAAQLQALARPAQSRAEELRRGVEAIVAKVRAEGDTALRELSAKYDRCAIDAI 63

Query: 67  KVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVAS 126
           +V+ EE AAA   L+ ELK A+  A   I  FH      PV VET PGVR ++V RP+A 
Sbjct: 64  EVTVEEFAAAEAALAPELKAAIEEAAARIAAFHRESAPRPVAVETAPGVRVERVLRPIAK 123

Query: 127 VGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPI---ADE-ILYAAQLCGVQDVF 182
           VGLY+P GSAPL ST LML  PA +AGC++VVLCSP       DE +LYAA++ GV  VF
Sbjct: 124 VGLYVPAGSAPLPSTALMLGVPAGLAGCREVVLCSPARADGRCDEAVLYAARVTGVHRVF 183

Query: 183 NVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVI 242
            +GGAQAIAA+A+GT SVP+ DK+FGPGNA+VTEAK QVS   DGAAIDMPAGPSEVLVI
Sbjct: 184 KLGGAQAIAAMAYGTGSVPRCDKLFGPGNAWVTEAKLQVSGDPDGAAIDMPAGPSEVLVI 243

Query: 243 ADSGATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQAL 302
           AD  A P+FVA+DLLSQAEHGPDSQVILL+P+  +  RVA  VERQ A LPRA  A QAL
Sbjct: 244 ADGKADPEFVAADLLSQAEHGPDSQVILLSPSDALLDRVAVEVERQCAALPRASIATQAL 303

Query: 303 NASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYA 362
             SRLI+   LAQ V +SN+Y PEHLI+Q    R L+D I SAGS+FLG W+PES GDY 
Sbjct: 304 AQSRLILVDSLAQAVAVSNRYAPEHLILQVTEPRALLDGIDSAGSIFLGAWTPESVGDYC 363

Query: 363 SGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNA 422
           SG+NHVLPTYGY  + S + +A FQK++TVQELS +G  A+     TLA AE+L AH+ A
Sbjct: 364 SGSNHVLPTYGYARSYSGVSVASFQKQITVQELSADGLRAIGPCTATLAEAEQLEAHRRA 423

Query: 423 VTLRVNALKEQA 434
           VTLR+ AL+ +A
Sbjct: 424 VTLRLAALEARA 435


Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 511
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 435
Length adjustment: 32
Effective length of query: 402
Effective length of database: 403
Effective search space:   162006
Effective search space used:   162006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate N515DRAFT_2937 N515DRAFT_2937 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.3414.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3414.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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