Alignments for a candidate for hisG in Dyella japonica UNC79MFTsu3.2

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate N515DRAFT_2938 N515DRAFT_2938 ATP phosphoribosyltransferase

Query= BRENDA::Q5HSJ4
         (299 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2938
          Length = 297

 Score =  244 bits (622), Expect = 2e-69
 Identities = 129/299 (43%), Positives = 184/299 (61%), Gaps = 4/299 (1%)

Query: 1   MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFSTNLPIDILRVRDDDIPG 60
           M+   RLRIA+QKSGRL++ +++LL+ CG+        L  F    P+D+L VRDDDIPG
Sbjct: 1   MKPRDRLRIAMQKSGRLTEPALDLLNRCGLTFRQSRDKLFLFGEGEPVDLLLVRDDDIPG 60

Query: 61  LIFDGVVDLGIIGENVLEENEL-ERQSLGENPSYKLLKKLDFGYCRLSLALPQENKFQNL 119
           LI  GV DLGI+G NVL E    + +  G    ++    L FG CRLS+A+PQE  ++  
Sbjct: 61  LIAQGVCDLGIVGRNVLSEYSFTDGREAGPLAEWR---SLGFGRCRLSIAVPQEMNYEQP 117

Query: 120 KDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPRANLADAICDLVSSGATLQA 179
           +   GLRIATSYP LL+ +++  G++    TL GSVE+APR   AD ICDLV SG TL A
Sbjct: 118 QQLAGLRIATSYPGLLRDWLRNQGVDAGVVTLAGSVEIAPRLGTADLICDLVQSGGTLVA 177

Query: 180 NNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVAGVMQARESKYIMLHAPKEKLD 239
           N L+E  V+ ES A L       + E+  +++ ++ R+ GVMQ RES+ ++L   ++ LD
Sbjct: 178 NQLREADVLLESEAVLAGPRTLPTDERGDMIELLLKRLDGVMQVRESRLLLLQTSRQHLD 237

Query: 240 KIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWETMEALKEEGASSILVLPIEKML 298
            +  LLPG  +PT+LP+A     + L  +    + W  +E +K+ GA  + VLP+EKML
Sbjct: 238 AVTRLLPGGPQPTLLPVAGQPDQLMLQALCAGEVSWRQLEEIKKAGAREMFVLPVEKML 296


Lambda     K      H
   0.317    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 246
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 297
Length adjustment: 27
Effective length of query: 272
Effective length of database: 270
Effective search space:    73440
Effective search space used:    73440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_2938 N515DRAFT_2938 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.28922.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28922.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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