Alignments for a candidate for hisH in Dyella japonica UNC79MFTsu3.2

Align IGP synthase glutamine amidotransferase subunit; EC 2.4.2.- (characterized)
to candidate N515DRAFT_2934 N515DRAFT_2934 glutamine amidotransferase

Query= CharProtDB::CH_024511
         (196 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2934
          Length = 196

 Score =  177 bits (450), Expect = 8e-50
 Identities = 91/197 (46%), Positives = 129/197 (65%), Gaps = 2/197 (1%)

Query: 1   MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRER 60
           M VV++D G  N+ SV+ A+ R G +  ++ D + +  AD++ LPGVG A   M ++RE 
Sbjct: 1   MAVVLVDAGGTNIGSVRYALQRLGVDAALTSDANAIRQADRVILPGVGAAGPGMARLREL 60

Query: 61  ELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDF-GLPLPHMGWN 119
            L +LI++ TQPVLG+CLGMQLL  RSEE    + L +I     +  +  GL +PHMGWN
Sbjct: 61  GLVELIRSLTQPVLGVCLGMQLLFERSEEG-ATECLAVIPGAASRFAEAPGLRVPHMGWN 119

Query: 120 RVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQKDNFYGVQFHP 179
           R+  +  + L  G+   A+ YFVHSYA+P N  T+A  ++G  F+A V + NF+G+QFHP
Sbjct: 120 RLRVERAHPLVAGLGTDAWAYFVHSYAVPANDSTLATADFGGAFSAVVARGNFHGMQFHP 179

Query: 180 ERSGAAGAKLLKNFLEM 196
           ERS   GA+LLKNFLE+
Sbjct: 180 ERSAGVGARLLKNFLEL 196


Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 196
Length adjustment: 20
Effective length of query: 176
Effective length of database: 176
Effective search space:    30976
Effective search space used:    30976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate N515DRAFT_2934 N515DRAFT_2934 (glutamine amidotransferase)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.4603.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4603.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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