Alignments for a candidate for hisN in Dyella japonica UNC79MFTsu3.2

Align Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 (characterized)
to candidate N515DRAFT_2935 N515DRAFT_2935 imidazoleglycerol-phosphate dehydratase

Query= SwissProt::Q9S5G5
         (355 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2935
          Length = 354

 Score =  387 bits (994), Expect = e-112
 Identities = 196/355 (55%), Positives = 242/355 (68%), Gaps = 1/355 (0%)

Query: 1   MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLG 60
           MS+K LF+DRDG LI EP +D Q+D ++KLA  PGVI  L +   AGY+LVM+TNQDGLG
Sbjct: 1   MSRKLLFVDRDGCLIEEP-ADEQIDSYEKLALLPGVIAALQRCVAAGYELVMVTNQDGLG 59

Query: 61  TQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAM 120
           T SFP+A F GPH L+M+I  SQGV+F EVLI    P D  D RKP + ++  YLA+   
Sbjct: 60  TDSFPEAHFTGPHELLMRILASQGVRFREVLIDRSFPRDGLDTRKPGIGMLRHYLADDGW 119

Query: 121 DRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGEQLTRRDRYAHVVRNTKETQI 180
            RA S ++GDR TD+Q A NMG+ G     + L W  I  QL    R A V RNT+ET+I
Sbjct: 120 SRAASAMVGDRQTDLQFAANMGVRGFLVGPKGLAWEEIAHQLLDAPRTATVTRNTRETRI 179

Query: 181 DVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEINVKGDLYIDDHHTVEDTGLALG 240
            V+V LDR    K  TG+GFFDHML+QI  HGGF +E+   GD  ID+HHT+ED  LALG
Sbjct: 180 TVRVDLDRVAEPKAQTGLGFFDHMLEQIGKHGGFALELECDGDTRIDEHHTIEDCALALG 239

Query: 241 EALKIALGDKRGICRFGFVLPMDECLARCALDISGRPHLEYKAEFTYQRVGDLSTEMIEH 300
           +AL+ ALGDKRGI R+GF LPMDE  A  ALD+SGRP+  ++  F  +RVGD+ TE++ H
Sbjct: 240 QALRQALGDKRGIARYGFTLPMDESQASAALDLSGRPYFVFEGSFPRERVGDVPTELVPH 299

Query: 301 FFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGDTLPSSKGVL 355
           FFRSL  T+G  LHL   G N HH VE+ FK   R LRQA+R EG  LPS+KG L
Sbjct: 300 FFRSLCETLGANLHLSVYGDNAHHMVEACFKVVARALRQALRREGSELPSTKGAL 354


Lambda     K      H
   0.322    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 426
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 354
Length adjustment: 29
Effective length of query: 326
Effective length of database: 325
Effective search space:   105950
Effective search space used:   105950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_2935 N515DRAFT_2935 (imidazoleglycerol-phosphate dehydratase)
to HMM TIGR01261 (hisB: histidinol-phosphatase (EC 3.1.3.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.24826.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24826.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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