Alignments for a candidate for prs in Dyella japonica UNC79MFTsu3.2

Align Ribose-phosphate pyrophosphokinase; RPPK; EC 2.7.6.1; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase (uncharacterized)
to candidate N515DRAFT_2463 N515DRAFT_2463 ribose-phosphate pyrophosphokinase

Query= curated2:Q8TUT6
         (291 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2463
          Length = 293

 Score =  127 bits (319), Expect = 3e-34
 Identities = 90/290 (31%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 2   IVLATSEGVKLGRRLAEELDAELAPVEEDRFPDGEQIVRV-PPELDGTVVVVHSMSPPQD 60
           +V A     +L   LA         +E  RFPDGE +VRV  P +    ++V ++  P D
Sbjct: 4   VVYAMPGNQELADALAHRRRMARLALELHRFPDGEGLVRVEEPPVGAEAIIVCTLDRP-D 62

Query: 61  ENLVKAIITLDAARENGAEEVIAIVPYMAYSRQDRRFEPGEPVSFRAVARAVSANADALI 120
           E  +  ++  D  RE GA  V  + PY+AY RQD RF PGE VS     R ++ + D  +
Sbjct: 63  EKTLPLLMAADTLRELGAGSVGLVAPYLAYLRQDARFRPGEAVSSGIFGRLLAEHFDWQV 122

Query: 121 TVD--LHEPGTLKYFDVP-AENVSAAEELGKYLAERFEGEDLVVIGPDEGARELAREVAS 177
           T+D  LH   +L    +P    +SAA  L  +L ER E    ++IGPDE +      VA+
Sbjct: 123 TIDPHLHRLRSLTEAGMPQGRAISAAPALAGWLRERVELP--LLIGPDEESAPWVESVAA 180

Query: 178 ICGVEYDHLEKKRLSGDEVEIHPKEL-DVEGRTVVLVDDMIDTGGTMVEAARALRDQGAG 236
           +         K+R    +V++   +L +  G   VL+DD+I +G T++++   LR  G  
Sbjct: 181 LMSAPAVVATKRRFGDRKVQVQLPDLSNWPGHNPVLLDDIISSGHTLLKSIEGLRALGMP 240

Query: 237 TLYAACTHALLTRNAATRLLASGFEDIIATDTVPNPFEKVSVAPPVAEAV 286
             +    H L   NA  RL  +G   ++ T++VP    ++ ++  +A A+
Sbjct: 241 APWCVAVHGLFADNALERLRVAGVAGVVTTNSVPGETARIDLSELLAAAL 290


Lambda     K      H
   0.314    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 293
Length adjustment: 26
Effective length of query: 265
Effective length of database: 267
Effective search space:    70755
Effective search space used:    70755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_2463 N515DRAFT_2463 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.30715.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30715.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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