Alignments for a candidate for prs in Dyella japonica UNC79MFTsu3.2

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate N515DRAFT_3805 N515DRAFT_3805 ribose-phosphate pyrophosphokinase

Query= SwissProt::P0A1V6
         (315 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3805
          Length = 320

 Score =  383 bits (983), Expect = e-111
 Identities = 192/309 (62%), Positives = 248/309 (80%), Gaps = 1/309 (0%)

Query: 6   LFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTND 65
           LF GNA   LA+ +A RL   LG A VGRFSDGE  ++I ENVR  ++F+IQ T AP+ +
Sbjct: 10  LFTGNAHRALAEDVATRLGVPLGKALVGRFSDGETQIEIEENVRRQEVFVIQPTGAPSAE 69

Query: 66  NLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRV 125
           NL EL+ +VDAL+RASA  +TAV+PYFGYARQDRR RSARVPITAK+VA  + +VGVDRV
Sbjct: 70  NLFELLTLVDALKRASAASVTAVMPYFGYARQDRRPRSARVPITAKMVAKMIGTVGVDRV 129

Query: 126 LTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQ-LNLDNPIVVSPDIGGVVRARAIAKLL 184
           LTVDLHA+QIQGFFD+PVDNV+ SP+LL D+ +  ++DN IVVSPD+GGVVRARA+AK L
Sbjct: 130 LTVDLHADQIQGFFDIPVDNVYASPLLLADIWRNHSMDNLIVVSPDVGGVVRARALAKRL 189

Query: 185 NDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRV 244
           +D D+AIIDKRRP+ANV+ VM+IIGDV G+ CVLVDD++DT GTLC AA ALKERGA++V
Sbjct: 190 DDADLAIIDKRRPKANVATVMNIIGDVDGKTCVLVDDIVDTAGTLCAAAAALKERGARKV 249

Query: 245 FAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLTDEIKALPNVRTLTLSGMLAEAIRRIS 304
            AY  HP+ SG A +N+ NS +D++VV +T+PL  E +A   +R L+++ +LAE IRRI+
Sbjct: 250 VAYCVHPVLSGAAISNIENSQLDQLVVTNTLPLRPEAQACAKIRQLSVAELLAETIRRIA 309

Query: 305 NEESISAMF 313
             ES+S+++
Sbjct: 310 FGESVSSLY 318


Lambda     K      H
   0.322    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 303
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 320
Length adjustment: 27
Effective length of query: 288
Effective length of database: 293
Effective search space:    84384
Effective search space used:    84384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_3805 N515DRAFT_3805 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13379.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13379.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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