Alignments for a candidate for ilvA in Dyella japonica UNC79MFTsu3.2

Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate N515DRAFT_0565 N515DRAFT_0565 threonine dehydratase

Query= BRENDA::P04968
         (514 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0565
          Length = 523

 Score =  532 bits (1371), Expect = e-155
 Identities = 276/503 (54%), Positives = 357/503 (70%), Gaps = 6/503 (1%)

Query: 15  EYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLT 74
           + LR  L A VYE A+ T L+    LS+RL   +L+KRED+QPV SFKLRGAY  M GL 
Sbjct: 17  DLLRRTLAARVYEVARETALESAPLLSARLGQRVLLKREDQQPVFSFKLRGAYNKMVGLD 76

Query: 75  EEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGG---EVLLH 131
             Q+A GVI ASAGNHAQGVA ++A+LG++A+IVMP     +K+DAVR  GG   EV+L 
Sbjct: 77  AAQRARGVIAASAGNHAQGVALAAAKLGLRAVIVMPVTAPQVKIDAVRRLGGAWVEVVLA 136

Query: 132 GANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGG 190
           G ++ +A+A+A  L QQ G+T+V PFD P VIAGQ T+ +E+L+Q    L  VFVPVGGG
Sbjct: 137 GDSYSDAQAEAARLEQQHGYTFVHPFDDPAVIAGQATVGMEILRQHPGPLHAVFVPVGGG 196

Query: 191 GLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE 250
           GL AGVA  IK L P++KVI V+  DS  +  +L+ G  V L  VGLFA+G AVKR+G E
Sbjct: 197 GLLAGVAAYIKALRPEVKVIGVQTVDSDAMAQSLEQGERVTLDEVGLFADGTAVKRVGAE 256

Query: 251 TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERL 310
           TF LCQ ++D ++ VD+DAICAA++D+F++ R+V EPSGALALAG+K+Y A H +    L
Sbjct: 257 TFALCQRHVDAMLRVDTDAICAAIRDVFQETRSVPEPSGALALAGLKQYAATHQLDDATL 316

Query: 311 AHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYR 370
             I+SGAN+NF  LR+V+ER E+GEQREA+ AVTIPEE+GSF +FC  LG RS+TEFNYR
Sbjct: 317 VAIVSGANLNFDRLRFVAERAEVGEQREAVFAVTIPEERGSFRRFCATLGQRSITEFNYR 376

Query: 371 FADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHP 430
             DA +A IFVG+++ R  +ER+ +       G+ V+DL+DDE+AKLH+R+M+GGR    
Sbjct: 377 IGDAASAHIFVGIQI-RQRDEREALTAAFAAEGFGVLDLTDDELAKLHLRHMIGGRSPLA 435

Query: 431 LQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFEL-GDHEPDFE 489
             E LY FEFPE PGAL RFL  +   WNISLFHYR+HG DYGR+L   ++       FE
Sbjct: 436 HDELLYRFEFPERPGALTRFLGHMHPDWNISLFHYRNHGADYGRILVGIQVPAGERAMFE 495

Query: 490 TRLNELGYDCHDETNNPAFRFFL 512
             L +LGY C DE+ NPA+R  L
Sbjct: 496 QFLAQLGYPCRDESGNPAYRLLL 518


Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 737
Number of extensions: 40
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 523
Length adjustment: 35
Effective length of query: 479
Effective length of database: 488
Effective search space:   233752
Effective search space used:   233752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate N515DRAFT_0565 N515DRAFT_0565 (threonine dehydratase)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.7138.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7138.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.