Align Acetolactate synthase small subunit; Short=AHAS; Short=ALS; EC 2.2.1.6 (characterized, see rationale)
to candidate N515DRAFT_0566 N515DRAFT_0566 acetolactate synthase, small subunit
Query= uniprot:A0A154R0Y7
(82 letters)
>FitnessBrowser__Dyella79:N515DRAFT_0566
Length = 82
Score = 114 bits (286), Expect = 2e-31
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 1 MNHTLSILLQNEAGALVRVAGLFAARGYNIDTLTVAATHDPAVSRLTLSLQCDEAALGQI 60
M HTLSILLQNEAGALVRVAGLF+ARG+NID+LTVAAT DPAVS+LTL + + A+ Q+
Sbjct: 1 MKHTLSILLQNEAGALVRVAGLFSARGFNIDSLTVAATQDPAVSQLTLVMHGADEAVDQL 60
Query: 61 LQQTRKLVDVLQVAHPAA 78
++QTRKLVDV++V+HPAA
Sbjct: 61 IKQTRKLVDVIEVSHPAA 78
Lambda K H
0.321 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 82
Length adjustment: 8
Effective length of query: 74
Effective length of database: 74
Effective search space: 5476
Effective search space used: 5476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (20.5 bits)
S2: 38 (19.2 bits)
Align candidate N515DRAFT_0566 N515DRAFT_0566 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.22179.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22179.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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