Alignments for a candidate for leuA in Dyella japonica UNC79MFTsu3.2

Align 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 (characterized)
to candidate N515DRAFT_0574 N515DRAFT_0574 2-isopropylmalate synthase

Query= SwissProt::Q8F445
         (501 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0574
          Length = 535

 Score =  469 bits (1206), Expect = e-136
 Identities = 240/498 (48%), Positives = 334/498 (67%), Gaps = 2/498 (0%)

Query: 5   DYVRIFDTTLRDGEQCPGAAMTENEKLEIASQLATMKVDIIEAGFPVSSPVQFQAVERIA 64
           D VRIFDTTLRDGEQ PG  M    KL +A  L  + VD++EAGFP +SP  F AV  IA
Sbjct: 20  DRVRIFDTTLRDGEQAPGFGMDRRAKLRMAHALEALGVDVMEAGFPQASPDDFAAVADIA 79

Query: 65  RETEGPMIAALARAMKADIEAASKALQPAKKRRIHTFIASSPIHMKYKLGKEPKEVLKMA 124
           +      + ALAR   ADI+ A +AL+ A+  RIH F+++SP+H ++KLG   ++V+  A
Sbjct: 80  KAVRHSTVCALARCQAADIDTAGRALEAAQHSRIHVFLSTSPLHREHKLGMSKQQVIDTA 139

Query: 125 VEAVTLCRQFVDDVEFSPEDATRSEPEFLRELCEAVIAAGATTINIPDTVGYTTPAEYGG 184
           + AV   R    +VEFS EDA R+EP++L E+  A IAAGATT+N PDTVGY TPAE   
Sbjct: 140 IAAVERARALCHEVEFSAEDAMRTEPDYLAEVFSAAIAAGATTVNAPDTVGYVTPAEIAE 199

Query: 185 LFKFLLSNVRGAEKIIFSAHCHNDLGLATANSLAAVQNGARQIECTINGIGERAGNTAME 244
            F +L  +V+GAE+++FS+HCH+DLG+A ANSLAAV  GARQIECTINGIGERAGN ++E
Sbjct: 200 RFAYLRKHVKGAERVVFSSHCHDDLGMAVANSLAAVSAGARQIECTINGIGERAGNASLE 259

Query: 245 EVVMAMRTRKDTFGIQTQIKTEEIARASYLVKTITGMLVQPNKAIVGANAFAHESGIHQD 304
           EVVMA+R R   FG+ ++I    + + S L+  +TG  V  NKAIVG NAFAHESGIHQ 
Sbjct: 260 EVVMALRVRGPYFGVDSRIDARRLVQTSRLLTQLTGQAVPRNKAIVGDNAFAHESGIHQH 319

Query: 305 GVIKHRETYEIMKPETVGLSSNRMVLGRHSGRAGFKDRIVKLGFSPQVEELEAAYQRFLE 364
           G++KHR TYEIM+P+ VG+   ++VLG+HSGR   + R+  LG +P+   ++  + RF  
Sbjct: 320 GMLKHRGTYEIMRPQDVGMGETKLVLGKHSGRHALRSRLQALGHTPEEAAMDDIFARFKA 379

Query: 365 IADRKKEIYDEDIRALFSEEARKSTGDRFQLEGFTVSTGTKSTPTAGVRIL-IDGHVREE 423
           +AD+K+EI+DED+ AL   +   + G  +++     S+    + +A VR+   DG    E
Sbjct: 380 LADKKREIHDEDLEALALGQDPDAAGP-WRIVQLNSSSHLGGSASASVRLAHDDGREIGE 438

Query: 424 SATGDGPVDAIYKAIQKTTGMDPEVSRLVISPVTEGQDAMAEASVTLEYKGDRVVGKGSS 483
           +A GDGPVDA+ +A+++ TG D E+++  +  V+EG DA  +A +T  +      G G S
Sbjct: 439 AAIGDGPVDAVLRAMERATGTDLELTQFQVRAVSEGGDAQGQAQLTARHAARNWRGNGVS 498

Query: 484 TDIIEACSRAYISALNRL 501
           TDI+EA + A +S +NR+
Sbjct: 499 TDIVEATALAALSIVNRI 516


Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 651
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 535
Length adjustment: 35
Effective length of query: 466
Effective length of database: 500
Effective search space:   233000
Effective search space used:   233000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate N515DRAFT_0574 N515DRAFT_0574 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.28339.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28339.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.