Alignments for a candidate for leuB in Dyella japonica UNC79MFTsu3.2

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate N515DRAFT_0570 N515DRAFT_0570 3-isopropylmalate dehydrogenase

Query= SwissProt::P12010
         (366 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0570
          Length = 365

 Score =  362 bits (929), Expect = e-105
 Identities = 183/365 (50%), Positives = 247/365 (67%), Gaps = 8/365 (2%)

Query: 1   MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETL 60
           MK ++  LPGDG+GPEV  AA+ VL  V  +  H   +E  LIGG AID  G PLP + L
Sbjct: 1   MKARIVTLPGDGVGPEVTAAAVAVLDAVAAHYDHTFDYEQHLIGGCAIDATGEPLPADAL 60

Query: 61  DICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPL 120
             C+ +DA+LLGAVGGPKW    A +RPE+GLL LR  +G++ANLRP++ +  L   SPL
Sbjct: 61  AACKSADAVLLGAVGGPKWSDPSAPVRPEQGLLALRAALGVYANLRPLQVHPALTALSPL 120

Query: 121 KRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQI 180
           K +++ NVD++ VRELTGG YFG  +       +   D   YT  E+ER++ +AF+LA+ 
Sbjct: 121 KDDKLRNVDVLFVRELTGGAYFGAKTRT----VDTATDECKYTVVEVERVVRRAFELARG 176

Query: 181 RRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240
           RR K+ SVDKANVLE+SR+WR   +  A  YPDV+L H LVDS +M L+  P  +DV+VT
Sbjct: 177 RRHKVTSVDKANVLETSRLWRSTVQRIAADYPDVKLEHQLVDSMAMLLLTQPASYDVVVT 236

Query: 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSA 300
           EN+FGDIL+DEA+ + GSLG+LPSASL     G+YEP+HGSAPDIAG+G ANP+G +LSA
Sbjct: 237 ENLFGDILTDEAAALAGSLGLLPSASLGEGARGLYEPIHGSAPDIAGKGVANPVGAILSA 296

Query: 301 ALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLNNSAA 360
           A++LR+S GLE+EA A+E AV+ VL+ G  + D+    G    T  + + ++  L+   A
Sbjct: 297 AMLLRHSLGLEEEAGAVEAAVEHVLEHGPRSRDI----GGDAGTAAIREAVVAALDEHVA 352

Query: 361 RPRIF 365
               F
Sbjct: 353 NSEAF 357


Lambda     K      H
   0.316    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 402
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 365
Length adjustment: 30
Effective length of query: 336
Effective length of database: 335
Effective search space:   112560
Effective search space used:   112560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_0570 N515DRAFT_0570 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.23870.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23870.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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