Alignments for a candidate for leuD in Dyella japonica UNC79MFTsu3.2

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate N515DRAFT_0571 N515DRAFT_0571 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit

Query= SwissProt::Q1MA52
         (202 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0571
          Length = 194

 Score =  174 bits (442), Expect = 7e-49
 Identities = 94/192 (48%), Positives = 118/192 (61%), Gaps = 4/192 (2%)

Query: 1   MDKFVKLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVL 60
           M    ++    A L   N+DTD IIP  +L T +R GLG   F + RY  DGS+NP F L
Sbjct: 1   MKAVTRIHSRTAVLADENIDTDRIIPARFLTTTERAGLGKLCFNDWRYLPDGSDNPAFPL 60

Query: 61  NKPAYRDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIK 120
           N+P  +   ILVAG NFGCGSSREHAPWALLDFGI+ V+ +  ADIF NN  KNG+L I 
Sbjct: 61  NQPQAKGCAILVAGRNFGCGSSREHAPWALLDFGIQAVLCSEIADIFRNNALKNGLLAIV 120

Query: 121 VSQEDLDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLT 180
           VS  +   L+D         L++D+E   I  PDGG I F L+ F RHCLLNG+D +G  
Sbjct: 121 VSDAEHRWLLDH----PGTELSIDVEGQYIALPDGGRIPFQLEPFARHCLLNGVDQLGYL 176

Query: 181 LEKGKAIDSFEK 192
           L+   AI  +E+
Sbjct: 177 LQHDDAIAHYEQ 188


Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 194
Length adjustment: 20
Effective length of query: 182
Effective length of database: 174
Effective search space:    31668
Effective search space used:    31668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate N515DRAFT_0571 N515DRAFT_0571 (3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.3465.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3465.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.