Alignments for a candidate for dapD in Dyella japonica UNC79MFTsu3.2

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate N515DRAFT_0740 N515DRAFT_0740 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Query= SwissProt::P56220
         (274 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0740
          Length = 275

 Score =  372 bits (955), Expect = e-108
 Identities = 187/275 (68%), Positives = 226/275 (82%), Gaps = 1/275 (0%)

Query: 1   MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKID-GQWVTHQWL 59
           MQ ++++I  AFERR D+T ++++T  R AV QVI LL+SG  RVAE    G W  +QW+
Sbjct: 1   MQSIESLINDAFERRNDLTQSDIETYLRPAVEQVIDLLESGERRVAEPDGHGGWTVNQWI 60

Query: 60  KKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIAR 119
           KKAVLL FRIN N+V+DG     +DKVP++FA  ++A  Q  G RVVP A VR+GA +A+
Sbjct: 61  KKAVLLYFRINGNRVVDGGSALAFDKVPLRFAHGNDAELQGLGARVVPGALVRRGAHVAK 120

Query: 120 NTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE 179
           + VLMPSYVNIGAYV  G+MVDTWATVGSCAQIG +VHLSGGVGIGGVLEPLQANPTIIE
Sbjct: 121 DAVLMPSYVNIGAYVGAGSMVDTWATVGSCAQIGAHVHLSGGVGIGGVLEPLQANPTIIE 180

Query: 180 DNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLP 239
           DNCFIGARSEVVEGV+VE+GSVI MGV+LGQSTRIY+R TG+I YGRVPAGSVVV+G+LP
Sbjct: 181 DNCFIGARSEVVEGVVVEKGSVIGMGVFLGQSTRIYNRATGQISYGRVPAGSVVVAGSLP 240

Query: 240 SKDGSYSLYCAVIVKKVDAKTRGKVGINELLRTID 274
           +KDG++SLY A+IVK+VD KTR K  INELLR+ +
Sbjct: 241 AKDGTHSLYAAIIVKQVDEKTRSKTSINELLRSAE 275


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 279
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 275
Length adjustment: 25
Effective length of query: 249
Effective length of database: 250
Effective search space:    62250
Effective search space used:    62250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate N515DRAFT_0740 N515DRAFT_0740 (2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.14488.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14488.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.