Alignments for a candidate for dapE in Dyella japonica UNC79MFTsu3.2

Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 (characterized)
to candidate N515DRAFT_0745 N515DRAFT_0745 succinyldiaminopimelate desuccinylase

Query= SwissProt::Q9JYL2
         (381 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0745
          Length = 377

 Score =  424 bits (1089), Expect = e-123
 Identities = 209/371 (56%), Positives = 257/371 (69%), Gaps = 2/371 (0%)

Query: 8   ELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGDTKNIWLRRGTKAPVVCFAG 67
           +L  ELI R SVTPDD  CQ LLA RL ++GF  E L +G+  N+W   G   P++ F G
Sbjct: 6   DLTAELIRRRSVTPDDAGCQALLAGRLARVGFKVEHLRYGEVDNLWATHGEGGPLLMFLG 65

Query: 68  HTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSI 127
           HTDVVPTGP E W S PFEPA RDG LYGRGAADMK S+A    A E FV  HP+H+G +
Sbjct: 66  HTDVVPTGPAESWRSDPFEPAVRDGYLYGRGAADMKGSVAAMAVALEAFVTAHPDHRGRV 125

Query: 128 ALLITSDEEGDA-LDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
             L+TSDEEG   LDG  KV +  +A  E ID+C+VGEP++ ++LGD+I+ GRRGSLS  
Sbjct: 126 GFLMTSDEEGPTNLDGVRKVAEHFRASGERIDWCVVGEPSSKERLGDLIRVGRRGSLSAT 185

Query: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATN 246
           LTV+G QGH+AYP  A NP+H FAPAL EL  E WDEGN  FPPTSFQ+SN+N GTGATN
Sbjct: 186 LTVRGIQGHVAYPEKAKNPIHAFAPALAELAAERWDEGNVDFPPTSFQVSNLNAGTGATN 245

Query: 247 VIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTQA-GKLTDV 305
           VIPG L    NFR+ST S    L++RV  ILD+H + Y L W+ SG+PFL  A G L D 
Sbjct: 246 VIPGALVALVNFRYSTASRAEALRERVERILDRHKLDYALDWNLSGEPFLCPAGGALRDT 305

Query: 306 ARAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENVRLNDIPKLS 365
             +   + CG+E E ST GGTSDGRFI  +  E++ELGP NATIH+++E V + D+ KL 
Sbjct: 306 VVSVCRDLCGVEPEQSTGGGTSDGRFIAPLGAEVVELGPVNATIHKVDECVAVADLDKLP 365

Query: 366 AVYEGILARLL 376
           ++Y  I  RLL
Sbjct: 366 SLYRAICERLL 376


Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 434
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 377
Length adjustment: 30
Effective length of query: 351
Effective length of database: 347
Effective search space:   121797
Effective search space used:   121797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_0745 N515DRAFT_0745 (succinyldiaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.14864.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.