Alignments for a candidate for lysA in Dyella japonica UNC79MFTsu3.2

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate N515DRAFT_2124 N515DRAFT_2124 diaminopimelate decarboxylase

Query= reanno::Korea:Ga0059261_2051
         (419 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2124
          Length = 426

 Score =  339 bits (869), Expect = 1e-97
 Identities = 182/401 (45%), Positives = 252/401 (62%), Gaps = 2/401 (0%)

Query: 14  ENVSIPAIAAEVGTPVYVYSTATLERHASALKNALAGLPSVHLAFAIKANPNLAVLGVLA 73
           + V +  +A  + TP + YS   +    + L+ AL G  ++ L +A+KAN NLA+L ++A
Sbjct: 19  DGVDLRRLAERIPTPFHAYSANAIRTRIAGLQQALHGFDAL-LCYAVKANSNLAILQLMA 77

Query: 74  RQGYGADVVSGGELKRALAAGMPAEDVVFSGVGKTRAELQLGLDEGIGQFNLELEEEGEV 133
             G GAD+VS GEL RAL AG+PA+ +VFSGVGKT AE+   L  GI +FN+E  +E E+
Sbjct: 78  EAGVGADIVSSGELWRALHAGIPAQRIVFSGVGKTAAEIAEALAAGILRFNVESADELEL 137

Query: 134 LADLAHAQGKTAPAVLRVNPDVDAGTHAKISTGKAENKFGVAIDRALEIFDRLAKRPGLN 193
           L  +A      A A +R+NPDVDA THAKISTGKAENKFGV+ID A   F   A++  + 
Sbjct: 138 LQRMAAELHVVAHAAVRINPDVDAQTHAKISTGKAENKFGVSIDEARRWFADSARQANVR 197

Query: 194 LRGVAIHIGSQLTELAPLEAAYKRVGELVAQLRAAGHTITHVDLGGGLGVPYHAGQTVST 253
           L G+ +HIGSQ+  + P   A+ RV     +L AAGH I  +D+GGGLGV Y  GQ    
Sbjct: 198 LDGLHVHIGSQILSVEPFRLAFARVAAFWRELEAAGHAIASIDVGGGLGVRYRDGQVPIP 257

Query: 254 AEEFGAMVARVTQGWNVTLMFEPGRFICGNAGVLVTEVIWVKPAAGNPYVIVDAAMNDLA 313
             ++ A +     G+   L+ EPGR++   AGVL+T V+ VK      ++++DAAMNDL 
Sbjct: 258 PGDYAAAIREALAGFRGRLLLEPGRYLVAEAGVLLTRVVRVKHGERRRFLVLDAAMNDLL 317

Query: 314 RPALYDAYHEF-EAVEPTGEKFVANIAGPVCETGDTFAMGREIDVVKSGDLAVFRTAGAY 372
           RP+LYDA+H+    ++        ++ GPVCETGDTFA+ RE+  + +G+L + RT GAY
Sbjct: 318 RPSLYDAWHDIVPLLDDARPPHRYDVVGPVCETGDTFAVERELPELHAGELVLIRTTGAY 377

Query: 373 GATMASTYNSRALVPEVLVSGDRFAVVADRIQPETIMGAER 413
           GA MASTYNSR L  EVL+   R A+V  R   E ++  E+
Sbjct: 378 GAAMASTYNSRPLAAEVLLDRGRHAIVRRRQSLEDMVAGEQ 418


Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 426
Length adjustment: 32
Effective length of query: 387
Effective length of database: 394
Effective search space:   152478
Effective search space used:   152478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_2124 N515DRAFT_2124 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.14560.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14560.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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