Alignments for a candidate for metB in Dyella japonica UNC79MFTsu3.2

Align Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 (characterized)
to candidate N515DRAFT_4363 N515DRAFT_4363 cystathionine gamma-synthase

Query= SwissProt::P00935
         (386 letters)



>FitnessBrowser__Dyella79:N515DRAFT_4363
          Length = 399

 Score =  424 bits (1089), Expect = e-123
 Identities = 213/374 (56%), Positives = 269/374 (71%), Gaps = 1/374 (0%)

Query: 6   ATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELE 65
           +T AVR+G+  D Q+G VVPP+HLS+ Y F G    RA+DYSR GNPTRD++  ALAELE
Sbjct: 11  STCAVRAGIESDTQHGAVVPPLHLSTNYAFEGLGGKRAYDYSRSGNPTRDLLGNALAELE 70

Query: 66  GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 125
            GAGAV+T +GM+A+ L   + +  G  ++A HDCYGG++RL D+ AK+G + + F D  
Sbjct: 71  QGAGAVVTASGMAAVALALEL-VPAGGRVLAAHDCYGGTWRLLDAWAKKGRFTLEFADLT 129

Query: 126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL 185
           D  AL A LA KP LV VE+PSNPLLR+ D+  +   A   GA+ VVDNTFLSPALQ PL
Sbjct: 130 DRVALAAGLASKPSLVWVETPSNPLLRITDVRHVAQAAHAAGALVVVDNTFLSPALQQPL 189

Query: 186 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245
            LGAD+V+HS TKY+NGHSDVV G V+A+D  V  +L WW N  G+TG  FDS+L LRGL
Sbjct: 190 VLGADVVVHSTTKYINGHSDVVGGAVVARDQAVADQLKWWGNCNGLTGAPFDSFLTLRGL 249

Query: 246 RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305
           RTL  R+   Q NAQ I   L     V+K+Y+P L  + GH +AARQQ GFGAMLSFEL+
Sbjct: 250 RTLSVRLRQHQENAQRIATLLDGHAAVRKVYYPGLESHPGHALAARQQAGFGAMLSFELE 309

Query: 306 GDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG 365
           GD   +  F+  L  F+LAESLGGVESL++H A+MTHA MAPEAR  AGI+++LLRIS G
Sbjct: 310 GDVAQIEAFVNELKYFSLAESLGGVESLVAHPASMTHASMAPEARRTAGIADSLLRISVG 369

Query: 366 IEDGEDLIADLENG 379
           IEDG+DL+ D++ G
Sbjct: 370 IEDGDDLVRDVDAG 383


Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 399
Length adjustment: 31
Effective length of query: 355
Effective length of database: 368
Effective search space:   130640
Effective search space used:   130640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_4363 N515DRAFT_4363 (cystathionine gamma-synthase)
to HMM TIGR02080 (metB: O-succinylhomoserine (thiol)-lyase (EC 2.5.1.48))

Software error:

../bin/blast/fastacmd -i /tmp/list.7869.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7869.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.