Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate N515DRAFT_0495 N515DRAFT_0495 methionine synthase (B12-dependent)
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Dyella79:N515DRAFT_0495
Length = 895
Score = 1150 bits (2974), Expect = 0.0
Identities = 572/893 (64%), Positives = 709/893 (79%), Gaps = 10/893 (1%)
Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400
RLSGLEPL I D LFVNVGERTNVTGSA+F++LIKE++Y EA+DVARQQV +GAQIID+
Sbjct: 7 RLSGLEPLVITPDLLFVNVGERTNVTGSAQFRKLIKEDRYEEAVDVARQQVASGAQIIDV 66
Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460
NMDEG++D+EAAM RFLNLIA EPDIARVP+M+DSSKW V+E GL+C+QGKGIVNSISMK
Sbjct: 67 NMDEGLIDSEAAMTRFLNLIAAEPDIARVPVMVDSSKWTVLEAGLRCLQGKGIVNSISMK 126
Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520
EG + F+ HA+ +++YGAAVVVMAFDEQGQADT RK+EIC RAY +LTE++ FPPEDI+
Sbjct: 127 EGEELFLEHARKVQQYGAAVVVMAFDEQGQADTCERKVEICSRAYALLTEQLDFPPEDIV 186
Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580
FDPNIFA+ATGIEEHNNYA DFI A ++KR P + ISGGVSNVSFSFRGN+ VREAIH
Sbjct: 187 FDPNIFAIATGIEEHNNYAVDFIEATRELKRRFPLSHISGGVSNVSFSFRGNNTVREAIH 246
Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640
+VFLY+AI+ GMDMGIVNAG L IYDD+PAELR+ VEDV+LNRR D TERLLE+A+ Y+
Sbjct: 247 SVFLYHAIKAGMDMGIVNAGALMIYDDVPAELRERVEDVVLNRRPDATERLLEIADNYKA 306
Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDG 700
K + + WR V +RL ++LV GI F++ DTEEARQ ATRP++VIEGPLMDG
Sbjct: 307 RKGE--VVVENLAWREKPVRERLSHALVHGIDAFVDADTEEARQLATRPLDVIEGPLMDG 364
Query: 701 MNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK----EQGKTNGKMVIATVKG 756
MNVVGDLFG GKMFLPQVVKSARVMK+AVAYL P+IE K + GK NG +V+ATVKG
Sbjct: 365 MNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPYIEEEKARTGDVGKNNGTIVMATVKG 424
Query: 757 DVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVN 816
DVHDIGKNIVGVVL+CNN++++DLGVMVPA+KIL A+E NADLIGLSGLITPSL+EM +
Sbjct: 425 DVHDIGKNIVGVVLRCNNFDVIDLGVMVPAQKILDAAREHNADLIGLSGLITPSLEEMSH 484
Query: 817 VAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQR 876
VA+EM+RQ F+IPLLIGGATTS+AHTA+KI+ +Y PTV+V++ASR VGV +L+S
Sbjct: 485 VAREMQRQEFSIPLLIGGATTSRAHTALKIDPHYKAPTVWVKDASRAVGVAQSLVSKDLV 544
Query: 877 DDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEA 936
D F+A+ R +YE VR +H + P V LE AR + DW Y PP + GV +A
Sbjct: 545 DAFMAKVRADYEEVRERHRNRGPGKSLVPLEKARAQRYTCDWAGYAPPQPRQPGVTVFDA 604
Query: 937 -SIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNP 995
+ LR YIDWTPFF W LAG+YP IL+DE+VG +A LF+DA MLD++ AE+ L
Sbjct: 605 YDLAELREYIDWTPFFQAWELAGRYPAILKDEIVGTQASELFRDAQAMLDRIVAERWLTA 664
Query: 996 RGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEK-TGFANYCLADFVAPKLSGK 1054
R V+G + A +VGDD E+Y ++ R + V HLRQQ +K ++ L DF+APK +GK
Sbjct: 665 RAVIGFWRAAQVGDDTEVYGEDGRK--LAVLRHLRQQADKPADRPDFSLGDFIAPKEAGK 722
Query: 1055 ADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGY 1114
D++GAFAVT G+ + FEA HDDY+ I++KALADRLAEAFAE +H+RVR+ +WGY
Sbjct: 723 QDWVGAFAVTAGIGIEEHVARFEAAHDDYSSILLKALADRLAEAFAERMHQRVRREFWGY 782
Query: 1115 APNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPG 1174
AP+E L NE LI E Y+GIRPAPGYPACP+HTEK+T+++LL+ + G++LTE +AM+P
Sbjct: 783 APDEALDNEALIDEKYRGIRPAPGYPACPDHTEKSTLFKLLDATANAGIELTEGYAMYPT 842
Query: 1175 ASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYDAD 1227
A+VSGWYFSHPDS+Y+ V ++ R+QVEDYA+RKG + E ERWLAPNL YD D
Sbjct: 843 AAVSGWYFSHPDSQYFVVGRLTREQVEDYAKRKGWTREEAERWLAPNLDYDPD 895
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2658
Number of extensions: 96
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 895
Length adjustment: 45
Effective length of query: 1182
Effective length of database: 850
Effective search space: 1004700
Effective search space used: 1004700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate N515DRAFT_0494 N515DRAFT_0494 5-methyltetrahydrofolate--homocysteine methyltransferase
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Dyella79:N515DRAFT_0494
Length = 361
Score = 427 bits (1099), Expect = e-124
Identities = 211/345 (61%), Positives = 257/345 (74%), Gaps = 12/345 (3%)
Query: 4 KVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFA-----------DWP-CDLKG 51
+V L A L ERIL+LDGGMGTM+Q +RL E FRGERF D P CDLKG
Sbjct: 11 RVALLEAALRERILILDGGMGTMLQGHRLEEEGFRGERFVEGRDHAHEAHHDHPGCDLKG 70
Query: 52 NNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLA 111
NNDLL L++P +I +H AY EAGAD++ETNTFNST I+ ADY +E L+ E+N A+LA
Sbjct: 71 NNDLLTLTQPAIIRGVHEAYLEAGADLVETNTFNSTRISQADYHLEHLAHELNLEGARLA 130
Query: 112 RACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALV 171
RA D WTA+TPE+PR+V GVLGPT+RTAS+SPDVNDP FRN+TF+ L A Y E+ LV
Sbjct: 131 RAACDAWTAKTPEQPRFVIGVLGPTSRTASLSPDVNDPGFRNVTFEELAANYTEAAAGLV 190
Query: 172 EGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAF 231
+GGADLI++ET+FDTLNAKAA+FA+ F G LP+MISGTITD SGRTLSGQT EAF
Sbjct: 191 DGGADLIMVETIFDTLNAKAALFAISELFRERGARLPVMISGTITDRSGRTLSGQTAEAF 250
Query: 232 YNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTM 291
Y S+ HA L+ GLNCALG +LR +VQ L+++A C+V+ HPNAGLPNAFGEYD + M
Sbjct: 251 YYSVAHARPLSVGLNCALGAADLRPHVQTLAQVAGCFVSTHPNAGLPNAFGEYDETPEQM 310
Query: 292 AKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEI 336
A I +A+ G LN+VGGCCGTTP HI A++ AV APR LP +
Sbjct: 311 AAVIGGFARDGLLNLVGGCCGTTPAHIKAIAEAVRDCAPRALPSL 355
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1134
Number of extensions: 41
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 361
Length adjustment: 38
Effective length of query: 1189
Effective length of database: 323
Effective search space: 384047
Effective search space used: 384047
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate N515DRAFT_0495 N515DRAFT_0495 (methionine synthase (B12-dependent))
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.5060.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5060.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.