Alignments for a candidate for proA in Dyella japonica UNC79MFTsu3.2

Align glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) (characterized)
to candidate N515DRAFT_3773 N515DRAFT_3773 glutamate-5-semialdehyde dehydrogenase

Query= BRENDA::A7Y114
         (420 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3773
          Length = 420

 Score =  346 bits (887), Expect = e-100
 Identities = 180/411 (43%), Positives = 256/411 (62%)

Query: 10  VEAQAIEAKKASKSLMILSDKEKNDALHHIADVLERDFEAILAANEKDLRNGREQGFTEA 69
           +  QA+  + A++ L  L+ + K   L  +AD L      +L AN +D+   RE+G   A
Sbjct: 4   MRTQALACRDAAQVLAELTTEAKRALLQALADALHAGTGVVLEANARDMAAAREKGVQGA 63

Query: 70  FMDRLSLSQERIRDFAQGLRDVAELEDPTGKKLSDWTLENGLQVEKVTVPLGVIGMIYEA 129
            +DRL L + R+      LR+VA L DP G      T  NGL+VE+V VPLGVI MIYEA
Sbjct: 64  MLDRLRLDEARVAGIVAALREVAALPDPVGVVTRRETRPNGLEVERVRVPLGVIAMIYEA 123

Query: 130 RPNVTVDATGLALKSGNAIVLKGGSSAINSNQAIVEVIHKALAETKIPQESVQFIASTDR 189
           RPNVT DA  L L +GN ++L+GGS A++SN AI  V+ +ALA   +P+ ++  ++   R
Sbjct: 124 RPNVTADAAALCLMAGNGVILRGGSEAVHSNTAIAGVLRQALAAQGVPEAALTLVSDLRR 183

Query: 190 AATNQLFTMKEHVDVLIPRGGGKLIQAVVENATVPVLETGVGNCHIYIDKDADVEKAISI 249
               +L  + + VD+ IPRGG  LI+ V E+A VPV++   G CH+Y+D+ AD   A+ +
Sbjct: 184 ETMVELLQLSDIVDLAIPRGGEGLIRFVAEHARVPVIKHYKGVCHLYVDRAADQALALDL 243

Query: 250 LVNAKTDRPAVCNAAETLIVHKDWLAQHSDELISALKKENIHVHGDEHVLTIIPDAVPAG 309
           LV+ KT RP VCNA ETL+VH+D  A+       AL +  + + G E    ++P   PA 
Sbjct: 244 LVDGKTSRPGVCNALETLLVHRDIAAEFLPRAADALGRRKVELRGCERSRALVPAMKPAD 303

Query: 310 EDDWKNEYLSTDIAVKAVDDLVDAIAHIETYGTKHSEAIVTENQEAADKFLAIVDAAAIY 369
           E D+  EYL   +AV+ VDDL  A+AHI  Y + H+E I T +++AA +F+  + +A + 
Sbjct: 304 ETDYAAEYLDLILAVRIVDDLEAALAHIHRYSSDHTEVIATRDEDAARRFVRGIRSAVVM 363

Query: 370 HNASTRFTDGGALGFGAEIGISTQKLHARGPMGLPALTTVKFLMKGTGQIR 420
            NAS+RF+DGG LG GAEIGIST +LHA GPMG  ALT  +F+++G GQ+R
Sbjct: 364 VNASSRFSDGGELGLGAEIGISTTRLHAYGPMGAEALTVERFVVRGDGQVR 414


Lambda     K      H
   0.315    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 449
Number of extensions: 22
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 420
Length adjustment: 32
Effective length of query: 388
Effective length of database: 388
Effective search space:   150544
Effective search space used:   150544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_3773 N515DRAFT_3773 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.30932.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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