Alignments for a candidate for proC in Dyella japonica UNC79MFTsu3.2

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate N515DRAFT_1783 N515DRAFT_1783 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1783
          Length = 274

 Score =  256 bits (653), Expect = 5e-73
 Identities = 137/268 (51%), Positives = 180/268 (67%), Gaps = 1/268 (0%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           RIAFIG GNMA SLIGGL   G+ A+ +  ++P AE R ++  EF +        AVA+A
Sbjct: 3   RIAFIGGGNMARSLIGGLLKTGIAASSVSVAEPRAEARQELGREFGVACYAEARPAVAEA 62

Query: 65  DVVVLSVKPQAMKAVCQALAPALKPEQ-LIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123
           +VVVL+VKPQ + A+   L   L+  + +++SIAAG+    LE WLG   P+VRCMPNTP
Sbjct: 63  EVVVLAVKPQVLPALRNELQDVLRQRRPMLISIAAGVRIDQLERWLGGQLPIVRCMPNTP 122

Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183
           AL+  GA+GL AN +VS  Q   A ++L A G+  W+DDEA +D VTA+SGSGPAYFF L
Sbjct: 123 ALIGAGATGLCANGRVSPPQRALAQRILDAAGLTRWIDDEALMDTVTALSGSGPAYFFAL 182

Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243
           ++A+ DA    G+ RETA  L  QT LGA +M   S   PAELRRRVTSPNGTT+AA++S
Sbjct: 183 VEALEDAAVAQGMPRETARALAAQTCLGAGRMLAESGEAPAELRRRVTSPNGTTQAALES 242

Query: 244 FQANGFEALVEQALNAASQRSAELAEQL 271
           F A+G   +V +A+ AA++R   LA  L
Sbjct: 243 FAADGLPRIVARAVAAATRRGEALAAAL 270


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 274
Length adjustment: 25
Effective length of query: 248
Effective length of database: 249
Effective search space:    61752
Effective search space used:    61752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate N515DRAFT_1783 N515DRAFT_1783 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.14417.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14417.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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