Alignments for a candidate for asp-kinase in Dyella japonica UNC79MFTsu3.2

Align aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (characterized)
to candidate N515DRAFT_4002 N515DRAFT_4002 aspartate kinase

Query= reanno::Dyella79:N515DRAFT_4002
         (853 letters)



>FitnessBrowser__Dyella79:N515DRAFT_4002
          Length = 853

 Score = 1678 bits (4345), Expect = 0.0
 Identities = 853/853 (100%), Positives = 853/853 (100%)

Query: 1   MKFGGTSVATLPRWQNIRELVASRRAEGARVLVVVSALTGITDALKQMCAQEDKGKRVEA 60
           MKFGGTSVATLPRWQNIRELVASRRAEGARVLVVVSALTGITDALKQMCAQEDKGKRVEA
Sbjct: 1   MKFGGTSVATLPRWQNIRELVASRRAEGARVLVVVSALTGITDALKQMCAQEDKGKRVEA 60

Query: 61  ARAIAQRHYDLLDHMQLAVPATLAERLSELAMLAEDGPGAMGELAWAALVQAHGELMSSA 120
           ARAIAQRHYDLLDHMQLAVPATLAERLSELAMLAEDGPGAMGELAWAALVQAHGELMSSA
Sbjct: 61  ARAIAQRHYDLLDHMQLAVPATLAERLSELAMLAEDGPGAMGELAWAALVQAHGELMSSA 120

Query: 121 LGAAFLSHAGLPTEWLDARDCLAAVALPNQNERTKLLSAMVEARPDPALNARLAELGEVF 180
           LGAAFLSHAGLPTEWLDARDCLAAVALPNQNERTKLLSAMVEARPDPALNARLAELGEVF
Sbjct: 121 LGAAFLSHAGLPTEWLDARDCLAAVALPNQNERTKLLSAMVEARPDPALNARLAELGEVF 180

Query: 181 ITQGFIAREAQGRTVLLGRGGSDTSASYFGALLKAQRVEIWTDVAGMFTANPRQVPGARL 240
           ITQGFIAREAQGRTVLLGRGGSDTSASYFGALLKAQRVEIWTDVAGMFTANPRQVPGARL
Sbjct: 181 ITQGFIAREAQGRTVLLGRGGSDTSASYFGALLKAQRVEIWTDVAGMFTANPRQVPGARL 240

Query: 241 LQRLDYEEAQEIASTGAKVLHPRCLSPLREPRVPMLIKDTNRPELEGTVIGPEVREHAPS 300
           LQRLDYEEAQEIASTGAKVLHPRCLSPLREPRVPMLIKDTNRPELEGTVIGPEVREHAPS
Sbjct: 241 LQRLDYEEAQEIASTGAKVLHPRCLSPLREPRVPMLIKDTNRPELEGTVIGPEVREHAPS 300

Query: 301 VKAISARKGITLVSMESVGMWQQVGFLADVFAQFKQHGLSVDLIGSAETNVTVSLDPTEN 360
           VKAISARKGITLVSMESVGMWQQVGFLADVFAQFKQHGLSVDLIGSAETNVTVSLDPTEN
Sbjct: 301 VKAISARKGITLVSMESVGMWQQVGFLADVFAQFKQHGLSVDLIGSAETNVTVSLDPTEN 360

Query: 361 LLDSDAIAALASDLAKVCRVKVIAPCAAITLVGRGMRSMLHTLSGVLAEFGQIRVHLISQ 420
           LLDSDAIAALASDLAKVCRVKVIAPCAAITLVGRGMRSMLHTLSGVLAEFGQIRVHLISQ
Sbjct: 361 LLDSDAIAALASDLAKVCRVKVIAPCAAITLVGRGMRSMLHTLSGVLAEFGQIRVHLISQ 420

Query: 421 SSNNLNLTFVVDENVVDDLLPHLHELLIAAGALRTDDSALFGPSWQALYGSGEVAAPAAS 480
           SSNNLNLTFVVDENVVDDLLPHLHELLIAAGALRTDDSALFGPSWQALYGSGEVAAPAAS
Sbjct: 421 SSNNLNLTFVVDENVVDDLLPHLHELLIAAGALRTDDSALFGPSWQALYGSGEVAAPAAS 480

Query: 481 WWRTAERERLLRLGAERTPRYVYHLPTVRQQARELKSLGAVDRLHYAVKANTHPAILKAL 540
           WWRTAERERLLRLGAERTPRYVYHLPTVRQQARELKSLGAVDRLHYAVKANTHPAILKAL
Sbjct: 481 WWRTAERERLLRLGAERTPRYVYHLPTVRQQARELKSLGAVDRLHYAVKANTHPAILKAL 540

Query: 541 AEEGFGFECVSPGELKAVLAAVPESAPLLFTPNFAPRADYEWALTTRATISLDALYQLEN 600
           AEEGFGFECVSPGELKAVLAAVPESAPLLFTPNFAPRADYEWALTTRATISLDALYQLEN
Sbjct: 541 AEEGFGFECVSPGELKAVLAAVPESAPLLFTPNFAPRADYEWALTTRATISLDALYQLEN 600

Query: 601 WGELFRGREIVLRVDLGRGLGHHEKVRTGGSGSKFGLPVELVDSFLRLADAHGVIVRGLH 660
           WGELFRGREIVLRVDLGRGLGHHEKVRTGGSGSKFGLPVELVDSFLRLADAHGVIVRGLH
Sbjct: 601 WGELFRGREIVLRVDLGRGLGHHEKVRTGGSGSKFGLPVELVDSFLRLADAHGVIVRGLH 660

Query: 661 AHLGSGILDEGHWGEVYGQLASLAERIGSVAFLDIGGGLGVPSHPGEARLDIAALDRVLR 720
           AHLGSGILDEGHWGEVYGQLASLAERIGSVAFLDIGGGLGVPSHPGEARLDIAALDRVLR
Sbjct: 661 AHLGSGILDEGHWGEVYGQLASLAERIGSVAFLDIGGGLGVPSHPGEARLDIAALDRVLR 720

Query: 721 SVKAAYPHYQLWMEPGRYLVADAGVLLARVTQQKGKGSWRYLGVDTGMNSLIRPALYEAW 780
           SVKAAYPHYQLWMEPGRYLVADAGVLLARVTQQKGKGSWRYLGVDTGMNSLIRPALYEAW
Sbjct: 721 SVKAAYPHYQLWMEPGRYLVADAGVLLARVTQQKGKGSWRYLGVDTGMNSLIRPALYEAW 780

Query: 781 HEIVNLTRLDEPATGLFQVVGPICESGDVLGTDRRLPEAQEGDVVLVAQAGAYGKVMSSP 840
           HEIVNLTRLDEPATGLFQVVGPICESGDVLGTDRRLPEAQEGDVVLVAQAGAYGKVMSSP
Sbjct: 781 HEIVNLTRLDEPATGLFQVVGPICESGDVLGTDRRLPEAQEGDVVLVAQAGAYGKVMSSP 840

Query: 841 YNMRDEAEEVILD 853
           YNMRDEAEEVILD
Sbjct: 841 YNMRDEAEEVILD 853


Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2350
Number of extensions: 90
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 853
Length of database: 853
Length adjustment: 42
Effective length of query: 811
Effective length of database: 811
Effective search space:   657721
Effective search space used:   657721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)

Align candidate N515DRAFT_4002 N515DRAFT_4002 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.5605.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5605.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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