Alignments for a candidate for thrB in Dyella japonica UNC79MFTsu3.2

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate N515DRAFT_0576 N515DRAFT_0576 homoserine kinase

Query= reanno::Dyella79:N515DRAFT_0576
         (330 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0576
          Length = 330

 Score =  644 bits (1661), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP 60
           MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP
Sbjct: 1   MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP 60

Query: 61  VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS 120
           VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS
Sbjct: 61  VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS 120

Query: 121 CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV 180
           CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV
Sbjct: 121 CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV 180

Query: 181 PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG 240
           PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG
Sbjct: 181 PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG 240

Query: 241 LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA 300
           LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA
Sbjct: 241 LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA 300

Query: 301 AFAEAGLDSDTLVSPIAGPSAALIDVERKA 330
           AFAEAGLDSDTLVSPIAGPSAALIDVERKA
Sbjct: 301 AFAEAGLDSDTLVSPIAGPSAALIDVERKA 330


Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 330
Length adjustment: 28
Effective length of query: 302
Effective length of database: 302
Effective search space:    91204
Effective search space used:    91204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_0576 N515DRAFT_0576 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.29101.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29101.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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