Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate N515DRAFT_0116 N515DRAFT_0116 tryptophan synthase, alpha chain
Query= uniprot:M4NLA4
(266 letters)
>FitnessBrowser__Dyella79:N515DRAFT_0116
Length = 266
Score = 431 bits (1107), Expect = e-125
Identities = 219/266 (82%), Positives = 238/266 (89%)
Query: 1 MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
M+RIDRRF LK+ RTGLIPFVTAGDP+PEH VALMHALVDAGAD+IELGVPFSDPMAD
Sbjct: 1 MNRIDRRFDTLKSNRRTGLIPFVTAGDPAPEHTVALMHALVDAGADVIELGVPFSDPMAD 60
Query: 61 GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
GPVIQHASERAIAKGVGLADVLGWV+ FRQ DADTP+VLMGYLNP+E GY RFA EAV+
Sbjct: 61 GPVIQHASERAIAKGVGLADVLGWVSTFRQRDADTPVVLMGYLNPVEIRGYERFAAEAVE 120
Query: 121 AGVDGVLLVDCPLEESAVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFAG 180
AGVDGVLLVDCPLEESAVL PL+ AGL++ILLAAPTT P+RMAQLCG+AEGFLYYVSFAG
Sbjct: 121 AGVDGVLLVDCPLEESAVLAPLKAAGLRQILLAAPTTAPARMAQLCGAAEGFLYYVSFAG 180
Query: 181 ITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRLA 240
ITGA LST DIAARVA +R+RAKAPVAVGFG+RDA SA+ IAGFADAVVIGSALV+RLA
Sbjct: 181 ITGAGRLSTSDIAARVAGIRSRAKAPVAVGFGVRDAQSARDIAGFADAVVIGSALVERLA 240
Query: 241 GATDAGEITRRTQAFLAPIRAALDAR 266
GA A EI R +AFL PIR ALDAR
Sbjct: 241 GAERADEIADRAKAFLQPIRTALDAR 266
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 322
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 266
Length adjustment: 25
Effective length of query: 241
Effective length of database: 241
Effective search space: 58081
Effective search space used: 58081
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)
Align candidate N515DRAFT_0116 N515DRAFT_0116 (tryptophan synthase, alpha chain)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))
../bin/blast/fastacmd -i /tmp/list.29819.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29819.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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