Alignments for a candidate for trpD_1 in Dyella japonica UNC79MFTsu3.2

Align anthranilate synthase (subunit 2/2) (EC 4.1.3.27) (characterized)
to candidate N515DRAFT_2113 N515DRAFT_2113 anthranilate synthase component 2

Query= BRENDA::P20576
         (201 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2113
          Length = 198

 Score =  289 bits (740), Expect = 2e-83
 Identities = 135/190 (71%), Positives = 163/190 (85%)

Query: 1   MLLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAG 60
           MLLMIDNYDSFT+NLVQY GEL  EVKVVRND L V  I AL P  I++SPGP TP++AG
Sbjct: 1   MLLMIDNYDSFTFNLVQYLGELGQEVKVVRNDALDVAGIRALRPSHIMISPGPGTPDDAG 60

Query: 61  VSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRARQVMHGKTSPIHHKDLGVFAGLAN 120
           VSL V+ + +G++P+ GVCLGHQ+IGQAFGG+V+RA+Q+MHGKTSP+ H+  GVFAGL +
Sbjct: 61  VSLDVLRQLSGEVPVFGVCLGHQAIGQAFGGKVIRAKQIMHGKTSPVRHRGRGVFAGLPD 120

Query: 121 PLTVTRYHSLVVKRESLPECLEVTAWTQHADGSLDEIMGVRHKTLNVEGVQFHPESILTE 180
           P   TRYHSLVV++ SLP+CLEVTAWT+HADGS+DEIMG+RHKTL +EGVQFHPESILT+
Sbjct: 121 PFEATRYHSLVVEQGSLPDCLEVTAWTEHADGSIDEIMGLRHKTLPIEGVQFHPESILTQ 180

Query: 181 QGHELLANFL 190
            GH+LL NFL
Sbjct: 181 HGHDLLRNFL 190


Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 214
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 198
Length adjustment: 21
Effective length of query: 180
Effective length of database: 177
Effective search space:    31860
Effective search space used:    31860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate N515DRAFT_2113 N515DRAFT_2113 (anthranilate synthase component 2)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.5276.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5276.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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