Alignments for a candidate for trpD_2 in Dyella japonica UNC79MFTsu3.2

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate N515DRAFT_2112 N515DRAFT_2112 anthranilate phosphoribosyltransferase (EC 2.4.2.18)

Query= SwissProt::Q8PD71
         (345 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2112
          Length = 351

 Score =  491 bits (1264), Expect = e-143
 Identities = 254/342 (74%), Positives = 289/342 (84%), Gaps = 1/342 (0%)

Query: 3   ITPQQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAAT 62
           ITPQ+ALQRTIEHREIFHDEM++LMRQIMRGEVS  M +AI+TGLRVKKETIGEI GAA 
Sbjct: 10  ITPQEALQRTIEHREIFHDEMIELMRQIMRGEVSPLMTAAIITGLRVKKETIGEITGAAR 69

Query: 63  VMREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKS 122
           VMRE + +VE     H VDIVGTGGDG+ +FNIST +MFVAAA GA+VAKHG RSVSSKS
Sbjct: 70  VMRELAEKVEAAPHAHFVDIVGTGGDGASSFNISTASMFVAAAAGARVAKHGGRSVSSKS 129

Query: 123 GSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNIL 182
           GSAD LEALGA I+L P +VA  + +T IGFM+AP HHPAMKVVAPVR+EMGVRT+FNIL
Sbjct: 130 GSADVLEALGASIDLAPARVAQCMDETDIGFMFAPNHHPAMKVVAPVRKEMGVRTLFNIL 189

Query: 183 GPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGEL 242
           GPLTNPAG+PNILMGVFHPDLVGIQ RVLQ+LGA  ALVVWGRDGMDE+SLGA TLVGEL
Sbjct: 190 GPLTNPAGAPNILMGVFHPDLVGIQVRVLQQLGARHALVVWGRDGMDEISLGASTLVGEL 249

Query: 243 RDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAAL 302
           RDG+V EYEV PEDFG+AM++SRNL+V +AAESRAMLL+ L+   G   DIV LNAGAAL
Sbjct: 250 RDGEVREYEVEPEDFGLAMASSRNLRVENAAESRAMLLEALEGRRGVPHDIVCLNAGAAL 309

Query: 303 YVAGVADSIADGIVRARQVLADGSARACLDAYVAFTQQ-ATA 343
           Y A VA SIA GI  AR  +A G+ARA +DA+VA T++ ATA
Sbjct: 310 YAADVAPSIAAGIELARATIASGAARAKMDAFVATTRRLATA 351


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 439
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 351
Length adjustment: 29
Effective length of query: 316
Effective length of database: 322
Effective search space:   101752
Effective search space used:   101752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_2112 N515DRAFT_2112 (anthranilate phosphoribosyltransferase (EC 2.4.2.18))
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.28620.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28620.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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