Alignments for a candidate for PAH in Dyella japonica UNC79MFTsu3.2

Align phenylalanine 4-monooxygenase (EC 1.14.16.1) (characterized)
to candidate N515DRAFT_3052 N515DRAFT_3052 Phenylalanine 4-hydroxylase

Query= BRENDA::P30967
         (297 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3052
          Length = 297

 Score =  367 bits (943), Expect = e-106
 Identities = 174/268 (64%), Positives = 207/268 (77%), Gaps = 2/268 (0%)

Query: 31  QPLDRYSAEDHATWATLYQRQCKLLPGRACDEFMEGLERLEVDADRVPDFNKLNQKLMAA 90
           QP   YS  DH  W TLY+RQ +LL GRAC EF++G+ER  +  + +P F  LN+ L   
Sbjct: 29  QPWADYSQTDHEVWNTLYRRQRELLKGRACQEFLDGIERFGMGENGIPKFADLNKVLGET 88

Query: 91  TGWKIVAVPGLIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPDVFHDLFGHVPLLINP 150
           TGW++VAV GL+PD+VFF+HLANRRFPV+WW+R P QLDYL EPD+FHDLFGHVPLL+NP
Sbjct: 89  TGWELVAVEGLLPDEVFFDHLANRRFPVSWWIRRPDQLDYLSEPDLFHDLFGHVPLLLNP 148

Query: 151 VFADYLEAYGKGGVKAKALG--ALPMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSES 208
           VFADY++AYG+GG+KA  +G  AL  L RLYWYTVEFGLINT  GMRIYGAGI+SSK ES
Sbjct: 149 VFADYMQAYGRGGMKAFGIGPEALMNLTRLYWYTVEFGLINTSEGMRIYGAGIVSSKGES 208

Query: 209 IYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDSFKQLFDATAPDFAPLYLQLADA 268
           IYCLDSA+PNR+GF L R+MNTRYRIDTFQ+TYFVIDSF+QLFDAT PDF P+Y  L   
Sbjct: 209 IYCLDSAAPNRIGFGLERVMNTRYRIDTFQQTYFVIDSFEQLFDATRPDFTPIYADLKTR 268

Query: 269 QPWGAGDVAPDDLVLNAGDRQGWADTED 296
           +   A DV   D V   G R+G+A   D
Sbjct: 269 EAHAAADVLDSDRVFTRGTREGFATDAD 296


Lambda     K      H
   0.323    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 297
Length adjustment: 26
Effective length of query: 271
Effective length of database: 271
Effective search space:    73441
Effective search space used:    73441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_3052 N515DRAFT_3052 (Phenylalanine 4-hydroxylase)
to HMM TIGR01267 (phhA: phenylalanine-4-hydroxylase (EC 1.14.16.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.14438.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14438.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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