Alignments for a candidate for ilvC in Dyella japonica UNC79MFTsu3.2

Align ketol-acid reductoisomerase (NAD+) (EC 1.1.1.382); ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate N515DRAFT_0568 N515DRAFT_0568 ketol-acid reductoisomerase

Query= BRENDA::C8WR67
         (344 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0568
          Length = 339

 Score =  395 bits (1015), Expect = e-115
 Identities = 194/316 (61%), Positives = 241/316 (76%), Gaps = 1/316 (0%)

Query: 15  LADKRIAVIGYGSQGHAHAQNLRDSGFDVVIGLRPGS-SWAKAEADGFRVMAVGEAVEES 73
           LA+ RIAV+GYGSQG AHA NLRDSG DVV+GLR G  SW +A A+GF V   GEAV  +
Sbjct: 10  LANARIAVLGYGSQGRAHALNLRDSGLDVVVGLRKGGPSWERASAEGFTVAEPGEAVRGA 69

Query: 74  DVIMILLPDERQPAVYEREIRPYLTAGKALAFAHGFNIHFSQIQPPKDVDVFMVAPKGPG 133
           D++ +L PD  QPA+Y+  I P + AG AL FAHGFN+HF QI P +D+DV +VAPKGPG
Sbjct: 70  DLVAVLTPDMVQPALYKESIEPNIKAGAALLFAHGFNVHFKQIAPREDIDVILVAPKGPG 129

Query: 134 HLVRRVYEAGGGVPALIAVHQDASGQAKDLALAYARGIGAGRAGILTTTFREETETDLFG 193
            LVRR YE G GVP++ A+HQD +GQA+  A AYA GIG GRA ++ T F+EETETDLFG
Sbjct: 130 ALVRREYEIGRGVPSIWAIHQDVTGQAEAKAKAYADGIGGGRALLIKTDFKEETETDLFG 189

Query: 194 EQAVLCGGLSALIKAGFETLVEAGYQPEIAYFECLHEMKLIVDLIYEGGLEYMRYSISDT 253
           EQAVLCGG S+L++AGFETLVEAGYQPEIAY+E LHE+KLIVDL YEGG+  M   +S+T
Sbjct: 190 EQAVLCGGASSLVQAGFETLVEAGYQPEIAYYEVLHELKLIVDLFYEGGIARMLEFVSET 249

Query: 254 AQWGDFTSGPRIINEETKKEMRRILADIQSGAFAKSWILENQANRPMFNAINRRELEHPI 313
           AQ+GD+ SGPR+I+  TK  M+ +L DIQ G FA++WI E QA  P +    + +LEHPI
Sbjct: 250 AQYGDYVSGPRVIDAGTKARMKDVLTDIQDGTFARNWIAEYQAGLPNYKRFKQADLEHPI 309

Query: 314 EVVGRKLRSMMPFIKA 329
           E VG KLR+ M +++A
Sbjct: 310 EQVGAKLRARMSWLQA 325


Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 395
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 339
Length adjustment: 29
Effective length of query: 315
Effective length of database: 310
Effective search space:    97650
Effective search space used:    97650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_0568 N515DRAFT_0568 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.6568.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6568.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.