Alignments for a candidate for ilvD in Dyella japonica UNC79MFTsu3.2

Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate N515DRAFT_0569 N515DRAFT_0569 dihydroxy-acid dehydratase

Query= SwissProt::P9WKJ5
         (575 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0569
          Length = 568

 Score =  493 bits (1268), Expect = e-143
 Identities = 270/553 (48%), Positives = 351/553 (63%), Gaps = 10/553 (1%)

Query: 20  RSRDVTDGLEKAAARGMLRAVGMDDEDFAKPQIGVASSWNEITPCNLSLDRLANAVKEGV 79
           RS  +  G ++A AR MLRA G+DD   AKP + V  +W+ ++PCNL+L  LA  V EG+
Sbjct: 2   RSDLIKTGADRAPARAMLRATGLDDGAIAKPLVAVVHTWSNVSPCNLNLRELAEQVAEGI 61

Query: 80  FSAGGYPLEFGTISVSDGISMGHEGMHFSLVSREVIADSVEVVMQAERLDGSVLLAGCDK 139
            +AGG P+EF TI+V+DGI+MG  GM  SL+SREVI DS+E+ +    LD  V+L GCDK
Sbjct: 62  RAAGGTPIEFNTIAVTDGIAMGTPGMRASLISREVITDSIELAVDGHCLDAMVVLCGCDK 121

Query: 140 SLPGMLMAAARLDLAAVFLYAGSILPGRAKLSDGSERDVTIIDAFEAVGACSRGLMSRAD 199
           ++P   MA ARLD+ AV LY G+I  G           +TI   FEAVGA   G +  A+
Sbjct: 122 TIPAAAMAMARLDIPAVALYGGTIAHGTH-----DAHPITIQQVFEAVGAHGAGKIDDAE 176

Query: 200 VDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGSAAPPATDRRRDGFARRSGQAVV 259
           + A+ER  CPG GACGG +TANTMA     LG+S  G    PAT   +   ARR G+ V+
Sbjct: 177 LAAVERDACPGAGACGGQFTANTMAMVLTTLGLSPMGFNDIPATHPAKAAAARRCGELVM 236

Query: 260 ELLRRGITARDILTKEAFENAIAVVMAFGGSTNAVLHLLAIAHEANVALSLQDFSRIGSG 319
           + LR   T R ++ + +  NA  +V A  GSTNAVLHLLAIA EA    +L+DF      
Sbjct: 237 DCLREQRTPRALINRTSLRNAARMVAATAGSTNAVLHLLAIAREAGAPWTLEDFEPASKH 296

Query: 320 VPHLADVKPFGRHVMSDVDHIGGVPVVMKALLDAGLLHGDCLTVTGHTMAENLAAITPPD 379
            P +AD+ P GR+   ++   GG   V + L+ AG+L  D  TVTG ++ E  AA  P  
Sbjct: 297 TPVIADLLPGGRYTAVEMFGAGGAARVAQELIAAGMLD-DVPTVTGRSLFEEAAA-APRA 354

Query: 380 PDGKVLRALANPIHPSGGITILHGSLAPEGAVVKTAGFDSDVFEGTARVFDGERAALDAL 439
               V+  +  P+ P GG +IL+G+LAPEG ++K AG  +  FEGTARVF+ E  A  A+
Sbjct: 355 EQQDVILPVGQPLKPRGGYSILYGNLAPEGCILKLAGKGATHFEGTARVFESEEQAFAAV 414

Query: 440 EDGTITVGDAVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVLLLTDGRFSGGTTGLCV 499
           + G I  GD +VIR EGP GGPGMREML +T A+ G GLG DV L+TDGRFSG T G  V
Sbjct: 415 QQGRIAKGDVIVIRNEGPAGGPGMREMLGVTAALIGRGLGDDVALITDGRFSGATHGFMV 474

Query: 500 GHIAPEAVDGGPIALLRNGDRIRLDVAGRVLDVLADPAEFASRQQDFSPPPPRYTTGVLS 559
           GH+APEAV GGPIALLR+GDRIR+D     L  +A  A+ A R+Q ++PP P+ TTG L+
Sbjct: 475 GHMAPEAVRGGPIALLRDGDRIRIDAG---LREIATDADLAERRQHWTPPAPKVTTGALA 531

Query: 560 KYVKLVSSAAVGA 572
           KY +LV SA+ GA
Sbjct: 532 KYARLVGSASDGA 544


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1019
Number of extensions: 39
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 568
Length adjustment: 36
Effective length of query: 539
Effective length of database: 532
Effective search space:   286748
Effective search space used:   286748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate N515DRAFT_0569 N515DRAFT_0569 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.28849.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28849.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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