Alignments for a candidate for argB in Desulfovibrio vulgaris Miyazaki F

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate 8499536 DvMF_0306 acetylglutamate kinase (RefSeq)

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__Miya:8499536
          Length = 320

 Score =  330 bits (845), Expect = 3e-95
 Identities = 165/284 (58%), Positives = 219/284 (77%), Gaps = 1/284 (0%)

Query: 12  AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71
           +KVL E LPY+R+F G+T+VIKYGG+AM+ E LK  FA ++ L+K VGINPVVVHGGGPQ
Sbjct: 22  SKVLIECLPYMRQFHGQTVVIKYGGHAMKDEALKKAFALNIALLKQVGINPVVVHGGGPQ 81

Query: 72  IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131
           IG +L++L I+S F +G+RVTD ATMDVVEMVL G+VNK+IVNL+N  G  A+GL+GKD 
Sbjct: 82  IGRMLEQLHIQSQFREGLRVTDDATMDVVEMVLVGKVNKEIVNLLNLSGVKAVGLSGKDG 141

Query: 132 ELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNG 191
           +LIRA+K+ +         PEIID+G VGEV  V   LL  L + +F+PVIAP+GV  NG
Sbjct: 142 QLIRARKMEMIVNGGNHA-PEIIDLGKVGEVMRVETTLLRSLERDNFVPVIAPVGVDENG 200

Query: 192 ESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGG 251
           E+YNINAD VAG VA AL+A++L+LLT++AG++DKQ +++  L+T +  EL  DGT+ GG
Sbjct: 201 ETYNINADAVAGAVAAALRAKRLLLLTDVAGILDKQKELIRSLTTREAVELFTDGTLTGG 260

Query: 252 MLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295
           M+PK++C LEA++ GV  A I+DGRV N +LLE+FTD G+ T I
Sbjct: 261 MIPKVKCCLEALEEGVEKAMIVDGRVENCILLELFTDKGISTEI 304


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 321
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 320
Length adjustment: 27
Effective length of query: 274
Effective length of database: 293
Effective search space:    80282
Effective search space used:    80282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate 8499536 DvMF_0306 (acetylglutamate kinase (RefSeq))
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.18679.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18679.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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