Alignments for a candidate for argC in Desulfovibrio vulgaris Miyazaki F

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate 8500980 DvMF_1717 N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)

Query= uniprot:E4PLW0
         (388 letters)



>FitnessBrowser__Miya:8500980
          Length = 350

 Score =  315 bits (808), Expect = 1e-90
 Identities = 165/349 (47%), Positives = 224/349 (64%), Gaps = 5/349 (1%)

Query: 44  VIKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRG----HYDLA 99
           +I+ G+VG TGYTG+EL R+LA HP + +   TSR+EAG P++++YP LRG    +  + 
Sbjct: 3   IIRAGLVGVTGYTGMELTRLLAGHPNMRLVRATSRTEAGRPLSDIYPFLRGLPGGNAVMT 62

Query: 100 FSEPDVNVLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMA 159
             +PD ++   CD+ F A PHG AM M   L   G+RVVDLSADFRL+D DV+  WY + 
Sbjct: 63  APDPD-DLADNCDVAFLAVPHGAAMEMGATLRQRGLRVVDLSADFRLRDPDVYEAWYKVP 121

Query: 160 HESPEWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADA 219
           H       +AVYGLPE+  D ++ A LVANPGCYPTA  LG    L+ GLV+   ++ DA
Sbjct: 122 HTRRAELPQAVYGLPELYGDAVKKAGLVANPGCYPTATILGLYAALKHGLVETDGIVVDA 181

Query: 220 KSGASGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIP 279
           KSGA+GAGR+  +G L  E+ ++F+AY    HRH PEI Q L   AG  + V+F PHL+P
Sbjct: 182 KSGATGAGRKAAVGTLFCEVSDTFRAYNIGKHRHTPEIEQELSAIAGTSMVVSFNPHLLP 241

Query: 280 MIRGIEATLYAELKNPADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMAL 339
           + RGI AT+YA+L  P     +QA FEQ +    +V V+P G  PETR VRG   C + +
Sbjct: 242 INRGILATIYAKLAKPVSPQDVQAAFEQTWQGSRWVRVLPAGQLPETRHVRGTMFCDVGV 301

Query: 340 HRQEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
              +++N +++ S IDNL +GA+GQAV N N+MFGL    GL    L+P
Sbjct: 302 VTDQRTNRLVILSAIDNLCRGASGQAVANANLMFGLPVETGLMLAPLMP 350


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 388
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 350
Length adjustment: 30
Effective length of query: 358
Effective length of database: 320
Effective search space:   114560
Effective search space used:   114560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 8500980 DvMF_1717 (N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.7787.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7787.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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