Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate 8499268 DvMF_0047 argininosuccinate synthase (RefSeq)
Query= SwissProt::P59846 (400 letters) >FitnessBrowser__Miya:8499268 Length = 401 Score = 505 bits (1301), Expect = e-148 Identities = 242/387 (62%), Positives = 296/387 (76%), Gaps = 1/387 (0%) Query: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61 K+VLAYSGGLDTS+ILKW+ TY EV+ TAD+GQ E+++ KALRTGAS+A DL Sbjct: 7 KVVLAYSGGLDTSVILKWIAVTYGCEVVTLTADLGQEEDLDGVDAKALRTGASRAYVEDL 66 Query: 62 KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121 +EEF RDF+FPMMR+GAVYEG YLLGTSIARPLIAK LV IA EGA+A+AHGATGKGND Sbjct: 67 REEFARDFIFPMMRSGAVYEGRYLLGTSIARPLIAKRLVDIARAEGAQAVAHGATGKGND 126 Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHI 181 QVRFEL AL PD+ VIAPWR W + R ++ A+AE HGIP+ T K YSMD N+LH Sbjct: 127 QVRFELAVNALAPDLDVIAPWRIWDLRSRTDLTAFAEQHGIPLS-TSSKQYSMDRNMLHC 185 Query: 182 SYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQR 241 S+EGG LEDPW EP M E+APD PEY+ +EF +GD VAVNGE +SPA++++ Sbjct: 186 SFEGGELEDPWCEPGPNSHVMAVPVEQAPDTPEYITIEFKKGDAVAVNGEAMSPASIIRT 245 Query: 242 LNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDML 301 LN IGGRHG+GR+D+VENRFVG+KSRGVYETPGGT+L+ A R +E + +DRE +H RD L Sbjct: 246 LNTIGGRHGIGRLDMVENRFVGIKSRGVYETPGGTVLHIAHRDLEGICMDRESMHLRDQL 305 Query: 302 SPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQD 361 P+Y+E VY GFW+APEREA+QA+ D +V G RLKLYKGN Y VGR +P +LY D Sbjct: 306 IPRYSEAVYNGFWFAPEREAMQAFIDKTQETVNGTVRLKLYKGNAYPVGRTSPNTLYCHD 365 Query: 362 LVSFDEAGGYDQKDAEGFIKIQALRLR 388 L +F++ YD DA GFIK+Q LR+R Sbjct: 366 LATFEDCATYDHADAAGFIKLQGLRVR 392 Lambda K H 0.319 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 473 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 401 Length adjustment: 31 Effective length of query: 369 Effective length of database: 370 Effective search space: 136530 Effective search space used: 136530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate 8499268 DvMF_0047 (argininosuccinate synthase (RefSeq))
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.16284.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16284.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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