Alignments for a candidate for argH in Desulfovibrio vulgaris Miyazaki F

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate 8499269 DvMF_0048 argininosuccinate lyase (RefSeq)

Query= SwissProt::Q9LAE5
         (461 letters)



>FitnessBrowser__Miya:8499269
          Length = 460

 Score =  422 bits (1085), Expect = e-122
 Identities = 220/452 (48%), Positives = 289/452 (63%), Gaps = 1/452 (0%)

Query: 1   MTKEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQ 60
           M +++ W  RF  A    +  +  S+ FD  L   D+ GS+AHA+MLA  G+++++E  +
Sbjct: 1   MAEKKMWGGRFRQATAALVEEYTQSVSFDRALYAQDIAGSKAHARMLAKQGVLTADEAAR 60

Query: 61  LVAGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTR 120
           +V GL+ +  E   G F    + EDVH  +E RLTE+VGDVGKKLHT RSRNDQV  D R
Sbjct: 61  IVEGLDMVLAEIEGGTFVWRRELEDVHMNIESRLTELVGDVGKKLHTGRSRNDQVALDFR 120

Query: 121 LYLRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQR 180
           L++ D+I+  +   R+   VL + A +H  TL+PG TH+Q AQPVSL HHLLAY  M +R
Sbjct: 121 LFVSDRIRAWRGLARDLVAVLAERAGEHANTLLPGCTHMQPAQPVSLGHHLLAYAWMLRR 180

Query: 181 DWERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEF 240
           D ERL D  RR  + PLG  ALAGTT+P+D  Y A+ LD    + NS+D VSDRDF +E 
Sbjct: 181 DAERLADCDRRTRVCPLGAAALAGTTYPLDPAYVAEQLDMYGTFRNSMDAVSDRDFVLES 240

Query: 241 LCAASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGR 300
           L   + IM HLSRL EE+I+W++  F FV L D+ ATGSSIMPQKKNPDV E++RGKTGR
Sbjct: 241 LFCGATIMAHLSRLCEEIIIWANPAFGFVRLPDAYATGSSIMPQKKNPDVAEIMRGKTGR 300

Query: 301 VFGHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLA 360
           V+G L AML  +KGLP+ YN+D+QEDKE   D   TV ASLE M  +LRE L F   R+ 
Sbjct: 301 VYGALTAMLTTVKGLPMTYNRDMQEDKEPFLDCDRTVSASLEIMAGMLRE-LGFNEGRMR 359

Query: 361 QAVTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAF 420
            A+   F NAT++ADYL  +G+PFREA++L G  V  +      L++L L + Q +    
Sbjct: 360 AALRAGFLNATELADYLVGKGIPFREAHHLTGAAVALAEERAITLEELPLADLQAICDRI 419

Query: 421 AADIYEAISPRQVVAARNSHGGTGFVQVSKAL 452
             D+Y  + P   VA R   GGTG   V+  L
Sbjct: 420 GDDVYAVLDPAAAVARREMPGGTGPASVAAQL 451


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 526
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 460
Length adjustment: 33
Effective length of query: 428
Effective length of database: 427
Effective search space:   182756
Effective search space used:   182756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate 8499269 DvMF_0048 (argininosuccinate lyase (RefSeq))
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.16146.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16146.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.