Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 (characterized)
to candidate 8501587 DvMF_2306 carbamoyl-phosphate synthase, large subunit (RefSeq)
Query= SwissProt::Q42601
(1187 letters)
>FitnessBrowser__Miya:8501587
Length = 1078
Score = 1246 bits (3225), Expect = 0.0
Identities = 643/1091 (58%), Positives = 807/1091 (73%), Gaps = 25/1091 (2%)
Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153
KRTDLK+IM++G+GPIVIGQACEFDYSGTQA KAL+EEGYEV+L+NSNPATIMTDP A+
Sbjct: 3 KRTDLKRIMVIGSGPIVIGQACEFDYSGTQAVKALKEEGYEVVLVNSNPATIMTDPGLAD 62
Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213
RTYI P+ PE V +I KERPDALLPT+GGQT LN A+ALA G LE+ GV+LIGA
Sbjct: 63 RTYIEPIEPETVAAIIRKERPDALLPTLGGQTGLNTALALAAMGVLEECGVDLIGANKQV 122
Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273
I+KAE RELF++AM NIGLK P SGI T+++ + ++ FPLIIRPAFT+GGTGGGI
Sbjct: 123 IEKAESRELFREAMANIGLKVPASGIARTMEDVRRLGTEM-PFPLIIRPAFTMGGTGGGI 181
Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333
AYN E+ E I GLAAS +V++E+S+LGWKE+E+EVMRD ADN VIICSIEN DPMG
Sbjct: 182 AYNMEDLEEIAARGLAASIKHEVMIEQSVLGWKEFEMEVMRDKADNCVIICSIENFDPMG 241
Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393
VHTGDSITVAPAQTLTD EYQ +RD SIAI+REIGVE GGSNVQF +NP +G++++IEMN
Sbjct: 242 VHTGDSITVAPAQTLTDVEYQMMRDASIAIMREIGVETGGSNVQFGINPQNGDMVVIEMN 301
Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453
PRVSRSSALASKATGFPIAK+AAKL+VGYTLD+IPNDITR+T ASFEPSIDY VTKIPRF
Sbjct: 302 PRVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITRETMASFEPSIDYCVTKIPRF 361
Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513
FEKFPG++ LTT MKSVGE+M++GRTF+ES QK LRSLE G G G A + + +
Sbjct: 362 TFEKFPGAKDELTTSMKSVGEAMSIGRTFKESLQKGLRSLEVGAPGLGSA-FRCKGPERE 420
Query: 514 QLKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQYLMSGTLS 573
+ LR PN RI + AM GM ++EI+E + +D WFL Q+K+LVD+E L L
Sbjct: 421 DIMRKLRTPNSRRIFYVRHAMLDGMTVEEIHEATAIDPWFLRQMKDLVDMEAELRDFALG 480
Query: 574 EITKEDLYEV-------KKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAE 626
D E+ K+ GFSD+Q+A K E +VRT R +G+ P+Y VDTCA+E
Sbjct: 481 NAMTVDNAELVALMRRAKEYGFSDRQLAEMWKRPESDVRTLRKQMGIAPTYYLVDTCASE 540
Query: 627 FEAHTPYMYSSYDVECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYET 686
FEA+TPY YS+Y+ E A ++KKV+ILGGGPNRIGQGIEFDYCCCH SFAL++ G +
Sbjct: 541 FEAYTPYYYSTYETGHEVAVEDRKKVIILGGGPNRIGQGIEFDYCCCHASFALKEMGVQA 600
Query: 687 IMLNSNPETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPLKLALPIKH 746
IM+NSNPETVSTDYDTSDRLYFEPLT EDV+N+I+ EKPDG++VQFGGQTPL LA+P
Sbjct: 601 IMVNSNPETVSTDYDTSDRLYFEPLTFEDVMNIIETEKPDGVVVQFGGQTPLNLAVP--- 657
Query: 747 YLDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALA 806
L AG V I GTSPDSID AEDRERF A+L +L + QP S +A +
Sbjct: 658 ---------LMRAG-VPILGTSPDSIDRAEDRERFQALLQKLGLRQPANATVMSLPEARS 707
Query: 807 IAKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEID 866
A +GYP VVRPSYVLGGRAMEIVYD+ +L Y N+V P+ P+L+DK+L AIE+D
Sbjct: 708 AAARIGYPTVVRPSYVLGGRAMEIVYDEEQLAEYFANSVGEKPKHPILIDKFLESAIEVD 767
Query: 867 VDTLTDSYGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTTKLAKKLNV 926
VD L+D +V + GIMEHIE+AG+HSGDSAC++P T+P + + I T +LA++L V
Sbjct: 768 VDALSDG-TDVYVAGIMEHIEEAGIHSGDSACVIPPHTLPEAIVNEIARQTVELARELRV 826
Query: 927 CGLMNCQYAITTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLKDLNFEK 986
GLMN Q+A+ G +++LE NPRASRT PFVSKA PL + A +M G +LK+L+
Sbjct: 827 VGLMNIQFAV-KDGLIYILEVNPRASRTAPFVSKATAVPLPRLATQIMLGATLKELDPWS 885
Query: 987 EVIPKHVSVKEAVFPFEKFQGCDVILGPEMRSTGEVMSISSEFSSAFAMAQIAAGQKLPL 1046
+ SVKE+VFPF +F G D++LGPEMRSTGEVM I+S F A+ Q+A GQ+LP
Sbjct: 886 MRRTGYFSVKESVFPFNRFPGVDILLGPEMRSTGEVMGIASSFEEAYLKGQLAGGQRLPQ 945
Query: 1047 SGTVFLSLNDMTKPHLEKIAVSFLELGFKIVATSGTAHFLELKGIPVERVLKLHEGRPHA 1106
SG +F+S+ND K + ++A F +LGF+++ATSGTA L G+P V K++EGRP+
Sbjct: 946 SGKIFISVNDRDKLLITEVASMFADLGFEVLATSGTAKLLREGGVPATSVHKVYEGRPNI 1005
Query: 1107 ADMVANGQIHLMLITSSGDALDQKDGRQLRQMALAYKVPVITTVAGALATAEGIKSLKSS 1166
D + NG I L+L T+SG Q D + +RQ L Y VP TTV+GA A A+ I++ +
Sbjct: 1006 VDFIKNGDIALVLNTASGKRTVQ-DSKSIRQATLMYGVPYSTTVSGAKAIAQAIRASRCC 1064
Query: 1167 AIKMTALQDFF 1177
+ + +LQ+++
Sbjct: 1065 GVNVKSLQEYY 1075
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3006
Number of extensions: 119
Number of successful extensions: 20
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1187
Length of database: 1078
Length adjustment: 46
Effective length of query: 1141
Effective length of database: 1032
Effective search space: 1177512
Effective search space used: 1177512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate 8501587 DvMF_2306 (carbamoyl-phosphate synthase, large subunit (RefSeq))
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.22378.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22378.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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