Alignments for a candidate for gatA in Desulfovibrio vulgaris Miyazaki F

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate 8502127 DvMF_2838 aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq)

Query= SwissProt::O06491
         (485 letters)



>FitnessBrowser__Miya:8502127
          Length = 501

 Score =  484 bits (1245), Expect = e-141
 Identities = 247/472 (52%), Positives = 332/472 (70%), Gaps = 6/472 (1%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           + E++  + ++E+    +      RI A +  + A L    E A A A+ LD A  G   
Sbjct: 13  LAEVRDRLARRELTAEQVTAACLDRITATEPAIAALLVTRGEGALAEARALDAA--GPDP 70

Query: 68  HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127
              L+G+P+ VKD + T G RTTC S+IL +F P YDA  V +L++A AV +GK NMDEF
Sbjct: 71  AKPLWGVPLTVKDALTTAGTRTTCGSRILGDFTPHYDAFAVGKLREAGAVILGKTNMDEF 130

Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187
           AMGSSTENSA+  T+NPWN+  VPGGSSGGSAA+VAAG+   SLG+DTGGSIRQPAS CG
Sbjct: 131 AMGSSTENSAFGPTRNPWNVARVPGGSSGGSAASVAAGQCFGSLGTDTGGSIRQPASLCG 190

Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247
            VGLKPTYGRVSR+GLVA+ SSLDQIGP+TRTVED A LL  I+G D  D+TSA + V D
Sbjct: 191 CVGLKPTYGRVSRFGLVAYGSSLDQIGPLTRTVEDAALLLSVIAGHDPRDATSATLPVDD 250

Query: 248 FLSSLTG--DIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYA 305
           ++ +L    D+ G++I VP+E+ GEG+  E   +  AAL    GLGAT  +V LPH+ Y+
Sbjct: 251 YMGALASRKDLSGVRIGVPREFRGEGIDPEVSAACEAALDTARGLGATIVDVELPHTPYS 310

Query: 306 LATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFA 365
           +A YY+++ +EAS+NLARFDG+RYG R ++  +L DLY ++RAEGFG+EV+RRIMLGT+ 
Sbjct: 311 IAAYYIIAPAEASSNLARFDGVRYGRRAESPRDLADLYVRSRAEGFGDEVQRRIMLGTYV 370

Query: 366 LSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAND 425
           LSSGYYDAYY+KA +VR LI++D+E    + DV+ GP +P  A+ +GE T DPL MY  D
Sbjct: 371 LSSGYYDAYYRKAAQVRRLIREDYEKALSRCDVLCGPASPVTAWGLGELTSDPLKMYMMD 430

Query: 426 ILTIPVNLAGVPGISVPCGLA--DGLPLGLQIIGKHFDESTVYRVAHAFEQA 475
           + T+ +NLAG+PG+ +P G+    G+P+GLQ++G+ F E  +   A+    A
Sbjct: 431 VFTLSLNLAGLPGLCIPVGMGSRSGMPVGLQMLGRAFGEGDLLAAANVLSGA 482


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 592
Number of extensions: 30
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 501
Length adjustment: 34
Effective length of query: 451
Effective length of database: 467
Effective search space:   210617
Effective search space used:   210617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate 8502127 DvMF_2838 (aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq))
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.7811.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7811.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.