Alignments for a candidate for gatB in Desulfovibrio vulgaris Miyazaki F

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate 8499813 DvMF_0578 aspartyl/glutamyl-tRNA amidotransferase subunit B (RefSeq)

Query= metacyc::MONOMER-13956
         (476 letters)



>FitnessBrowser__Miya:8499813
          Length = 476

 Score =  456 bits (1172), Expect = e-132
 Identities = 232/472 (49%), Positives = 314/472 (66%), Gaps = 1/472 (0%)

Query: 3   FETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMKA 62
           +E VIGLEVH +L+T+SK+F S  T FG+  NT    +  G PGVLPV N  AVE+A + 
Sbjct: 4   YEAVIGLEVHAQLRTRSKLFCSCSTAFGSAPNTNVCEVCSGMPGVLPVPNARAVEYAARM 63

Query: 63  AMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGGKTKRIGITRLH 122
            MA+NC +   + F RKNYFYPD PK YQISQF+ PI E+G + I V G+T+RIGITR+H
Sbjct: 64  GMAVNCTVNPVSVFARKNYFYPDLPKGYQISQFETPICEHGHLNISVNGQTRRIGITRIH 123

Query: 123 LEEDAGKLTHT-GDGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYTGVS 181
           +E+DAGK  H+ GD  S VD NR G PL+EIVSEPD+R+ EEA AYL+ L +I+ Y G+ 
Sbjct: 124 MEDDAGKNIHSAGDNASYVDLNRSGVPLIEIVSEPDMRSAEEAVAYLKALHAIVVYLGIC 183

Query: 182 DCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLLSGFF 241
           D  MEEGS RCDAN+S+RP GQ+EFGT+ ELKNLNSF  VQ+ +E+E  RQ+ VL  G  
Sbjct: 184 DGNMEEGSFRCDANVSIRPKGQQEFGTRAELKNLNSFRNVQRAIEYEIARQQDVLEDGDA 243

Query: 242 IQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPDERR 301
           + QETR YD     T+ MR KE + DYRYFP+PDL+ + I ++   R +A +PELP  R 
Sbjct: 244 VVQETRLYDAVKNVTVSMRGKEEAHDYRYFPDPDLMPVRIAEDDLVRWRADLPELPQARV 303

Query: 302 KRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKELA 361
            R++     +  DA VLT  + +ADFFE       + K+ +N + G +   LN     + 
Sbjct: 304 ARFMSAYDLSEQDADVLTADRALADFFEAATAACGQPKKVANLMQGALLRELNQRAVTVD 363

Query: 362 DVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQISDEGVLLK 421
            +A+ PE L  ++++IE G IS+KIA  +F EL+E G   E  VKE+GLVQISD   +  
Sbjct: 364 AIAMRPEALGELVRIIEAGLISAKIANDIFGELVETGAMPEAFVKERGLVQISDTSAIET 423

Query: 422 LVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEI 473
            V EA+  NP  +E +K GK + I F +GQIM+ +KG+ANP +V ++L +++
Sbjct: 424 AVDEAIAENPAEVEAYKGGKTKLISFFMGQIMRKTKGKANPALVTELLQKKL 475


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 580
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 476
Length adjustment: 33
Effective length of query: 443
Effective length of database: 443
Effective search space:   196249
Effective search space used:   196249
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate 8499813 DvMF_0578 (aspartyl/glutamyl-tRNA amidotransferase subunit B (RefSeq))
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.7313.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7313.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.