Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate 8502126 DvMF_2837 glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq)
Query= curated2:Q72DX0
(94 letters)
>FitnessBrowser__Miya:8502126
Length = 95
Score = 124 bits (311), Expect = 3e-34
Identities = 61/92 (66%), Positives = 72/92 (78%)
Query: 3 ISKEQVATIARLARLDLDEARLERFAGQFGDILDYMDMLGAVDTTDVEPLYSPSEHGTVL 62
IS +QVA IARLARL DEA+L FA QFGDIL YM+ML +DTT VEPLYSP +H T L
Sbjct: 4 ISTDQVAAIARLARLAPDEAQLATFARQFGDILGYMEMLNGLDTTGVEPLYSPVQHATAL 63
Query: 63 RADEVHTHCTREELLANAPESDGQFFVVPRIV 94
R+DE CTRE++L NAPE+D +FF+VPRIV
Sbjct: 64 RSDETAPRCTREDVLRNAPEADSEFFIVPRIV 95
Lambda K H
0.320 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 95
Length adjustment: 10
Effective length of query: 84
Effective length of database: 85
Effective search space: 7140
Effective search space used: 7140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 39 (19.6 bits)
Align candidate 8502126 DvMF_2837 (glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq))
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.23803.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23803.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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