Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate 8499506 DvMF_0276 aspartate kinase (RefSeq)
Query= SwissProt::A4VJB4 (412 letters) >FitnessBrowser__Miya:8499506 Length = 409 Score = 440 bits (1131), Expect = e-128 Identities = 226/409 (55%), Positives = 305/409 (74%), Gaps = 1/409 (0%) Query: 1 MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60 M ++VQKFGGTSV +E ++QV EKV++ G VVV+SA SGETNRL+ LA++ S Sbjct: 1 MRILVQKFGGTSVANLECMKQVREKVRRALRDGYKPVVVLSARSGETNRLLALAEEWSTD 60 Query: 61 PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120 P P E+D +++TGEQV++AL +M L G+ A S TG QV I T A +ARI+ IDA R Sbjct: 61 PDPAEVDALIATGEQVSVALFSMLLKDSGIKARSMTGFQVPITTSDAFGRARIMDIDASR 120 Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180 ++++++ V+VVAGFQGV +G +TTLGRGGSDT+ VALAAAL + EC+IYTDVDGVYT Sbjct: 121 LRKELETHDVIVVAGFQGVTSEGRVTTLGRGGSDTSAVALAAALGSVECEIYTDVDGVYT 180 Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEGPGTLI 240 TDP + + A++LD+++++EMLEMAS+G+KVLQIR+VEFA KY VP+ V +F + PGT++ Sbjct: 181 TDPNLCSTARKLDRVSYDEMLEMASMGAKVLQIRSVEFAKKYKVPVHVRSTFTDTPGTMV 240 Query: 241 TLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAH 300 T E+ ME ++SGIA+++D+A++T+R VPD PGV+ I GP+S + VDMIVQN + Sbjct: 241 T-QEDCEMEAVLVSGIAYDKDQARVTLRSVPDKPGVSAAIFGPLSQQGILVDMIVQNPSR 299 Query: 301 DNTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVASRM 360 D TD TFTV R D L +++ I A GA+E + DT +AKVS +GVGMR+H+GVA++ Sbjct: 300 DGVTDMTFTVPRKDLKKTLALMEEIRARTGAQEVLHDTQVAKVSAIGVGMRNHSGVAAKA 359 Query: 361 FEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDAPAGN 409 F AL ENINI MISTSEIK++ +IEEKY ELAVR LH AF L+ GN Sbjct: 360 FAALHAENINILMISTSEIKITCLIEEKYTELAVRTLHDAFGLNHDLGN 408 Lambda K H 0.317 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 451 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 412 Length of database: 409 Length adjustment: 31 Effective length of query: 381 Effective length of database: 378 Effective search space: 144018 Effective search space used: 144018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate 8499506 DvMF_0276 (aspartate kinase (RefSeq))
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.8347.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8347.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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