Align Fructose-bisphosphate aldolase; Glfba; glFBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 (characterized)
to candidate 8499233 DvMF_0013 fructose-1,6-bisphosphate aldolase, class II (RefSeq)
Query= SwissProt::A8B2U2 (323 letters) >FitnessBrowser__Miya:8499233 Length = 307 Score = 294 bits (752), Expect = 2e-84 Identities = 159/301 (52%), Positives = 205/301 (68%), Gaps = 5/301 (1%) Query: 1 MPLCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMI 60 MPL +QM A K Y +GAFNVNNME IQGIM+A + ++P+ILQ S GA KY+ Sbjct: 1 MPLTGPKQMFERAYKEGYAIGAFNVNNMEIIQGIMQAAGEEQAPLILQVSAGARKYAGQN 60 Query: 61 YLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASHHPFDENVRITKE 120 Y+ KL EAAL D+P+ +HLDHG K ID GF+SVM D SH P++EN+ +T++ Sbjct: 61 YIVKLIEAAL-MDTDLPVVLHLDHGQDFNICKDCIDGGFTSVMYDGSHLPYEENIAVTRQ 119 Query: 121 VVAYAHARGVSVEAELGTLGGIEEDVQNTVQL-TEPQDAKKFVELTGVDALAVAIGTSHG 179 VV YAHARGV VEAELG L G+E++V + T+P A FV+ TG D+LA+AIGTSHG Sbjct: 120 VVEYAHARGVWVEAELGQLAGVEDEVSAEHSVYTDPDQAVDFVKRTGCDSLAIAIGTSHG 179 Query: 180 AYKFKSESDIRLAIDRVKTISD-LTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPI 238 AYKF E+ + A R++ I+ L G PLV+HG+SSVP++ DM N YGGK+ A GVP Sbjct: 180 AYKFTGEAKLDFA--RLEKITSMLPGYPLVLHGASSVPQEFVDMANTYGGKVGSAKGVPE 237 Query: 239 ESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKI 298 + + A GVCKIN+D+D R+AMT IRK F+E P FDPR YL P RDA+ M+ KI Sbjct: 238 DLLRKAATYGVCKINIDTDIRLAMTATIRKHFMEKPADFDPRAYLKPARDAVKNMVQHKI 297 Query: 299 K 299 + Sbjct: 298 R 298 Lambda K H 0.318 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 289 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 323 Length of database: 307 Length adjustment: 27 Effective length of query: 296 Effective length of database: 280 Effective search space: 82880 Effective search space used: 82880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 8499233 DvMF_0013 (fructose-1,6-bisphosphate aldolase, class II (RefSeq))
to HMM TIGR01859 (fba: fructose-1,6-bisphosphate aldolase, class II (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.23155.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23155.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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